Literature DB >> 12805538

Phylogenomics: intersection of evolution and genomics.

Jonathan A Eisen1, Claire M Fraser.   

Abstract

Much has been gained from genomic and evolutionary studies of species. Combining the perspectives of these different approaches suggests that an integrated phylogenomic approach will be beneficial.

Mesh：

Year:  2003        PMID： 12805538     DOI： 10.1126/science.1086292

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


  89 in total

1.  Phylogenetic molecular function annotation.

Authors:  Barbara E Engelhardt; Michael I Jordan; Susanna T Repo; Steven E Brenner
Journal:  J Phys Conf Ser       Date:  2009

2.  From complete genome sequence to 'complete' understanding?

Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Trends Biotechnol       Date:  2010-08       Impact factor: 19.536

Review 3.  The ecological coherence of high bacterial taxonomic ranks.

Authors:  Laurent Philippot; Siv G E Andersson; Tom J Battin; James I Prosser; Joshua P Schimel; William B Whitman; Sara Hallin
Journal:  Nat Rev Microbiol       Date:  2010-07       Impact factor: 60.633

Review 4.  Phylogenomics meets neuroscience: how many times might complex brains have evolved?

Authors:  L L Moroz
Journal:  Acta Biol Hung       Date:  2012

Review 5.  The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data.

Authors:  James McInerney; Davide Pisani; Mary J O'Connell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

6.  Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone.

Authors:  Alison Cloutier; Timothy B Sackton; Phil Grayson; Michele Clamp; Allan J Baker; Scott V Edwards
Journal:  Syst Biol       Date:  2019-11-01       Impact factor: 15.683

7.  Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from complete genomes without sequence alignment.

Authors:  Z G Yu; L Q Zhou; V V Anh; K H Chu; S C Long; J Q Deng
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

Review 8.  Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Authors:  Jim Leebens-Mack; Todd Vision; Eric Brenner; John E Bowers; Steven Cannon; Mark J Clement; Clifford W Cunningham; Claude dePamphilis; Rob deSalle; Jeff J Doyle; Jonathan A Eisen; Xun Gu; John Harshman; Robert K Jansen; Elizabeth A Kellogg; Eugene V Koonin; Brent D Mishler; Hervé Philippe; J Chris Pires; Yin-Long Qiu; Seung Y Rhee; Kimmen Sjölander; Douglas E Soltis; Pamela S Soltis; Dennis W Stevenson; Kerr Wall; Tandy Warnow; Christian Zmasek
Journal:  OMICS       Date:  2006

9.  Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects.

Authors:  Joël Savard; Diethard Tautz; Stephen Richards; George M Weinstock; Richard A Gibbs; John H Werren; Hervé Tettelin; Martin J Lercher
Journal:  Genome Res       Date:  2006-10-25       Impact factor: 9.043

10.  Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.

Authors:  Xun Gu; Zhixi Su
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205
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