Literature DB >> 12788546

From biological databases to platforms for biomedical discovery.

J Daniel Navarro1, Vidya Niranjan, Suraj Peri, Chandra Kiran Jonnalagadda, Akhilesh Pandey.   

Abstract

The use of high-throughput DNA sequencing and proteomic methods has led to an unprecedented increase in the amount of genomic and proteomic data. Application of computing technologies and development of computational tools to analyze and present these data has not kept pace with the accumulation of information. Here, we discuss the use of different database systems to store biological information and mention some of the key emerging computing technologies that are likely to have a key role in the future of bioinformatics.

Mesh:

Year:  2003        PMID: 12788546     DOI: 10.1016/s0167-7799(03)00108-2

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  11 in total

1.  PROTEOME-3D: an interactive bioinformatics tool for large-scale data exploration and knowledge discovery.

Authors:  Deborah H Lundgren; Jimmy Eng; Michael E Wright; David K Han
Journal:  Mol Cell Proteomics       Date:  2003-09-07       Impact factor: 5.911

2.  ONCOMINE: a cancer microarray database and integrated data-mining platform.

Authors:  Daniel R Rhodes; Jianjun Yu; K Shanker; Nandan Deshpande; Radhika Varambally; Debashis Ghosh; Terrence Barrette; Akhilesh Pandey; Arul M Chinnaiyan
Journal:  Neoplasia       Date:  2004 Jan-Feb       Impact factor: 5.715

3.  Terminological mapping for high throughput comparative biology of phenotypes.

Authors:  Y A Lussier; J Li
Journal:  Pac Symp Biocomput       Date:  2004

Review 4.  Database resources in metabolomics: an overview.

Authors:  Eden P Go
Journal:  J Neuroimmune Pharmacol       Date:  2009-05-07       Impact factor: 4.147

5.  Human protein reference database as a discovery resource for proteomics.

Authors:  Suraj Peri; J Daniel Navarro; Troels Z Kristiansen; Ramars Amanchy; Vineeth Surendranath; Babylakshmi Muthusamy; T K B Gandhi; K N Chandrika; Nandan Deshpande; Shubha Suresh; B P Rashmi; K Shanker; N Padma; Vidya Niranjan; H C Harsha; Naveen Talreja; B M Vrushabendra; M A Ramya; A J Yatish; Mary Joy; H N Shivashankar; M P Kavitha; Minal Menezes; Dipanwita Roy Choudhury; Neelanjana Ghosh; R Saravana; Sreenath Chandran; Sujatha Mohan; Chandra Kiran Jonnalagadda; C K Prasad; Chandan Kumar-Sinha; Krishna S Deshpande; Akhilesh Pandey
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  PROFESS: a PROtein function, evolution, structure and sequence database.

Authors:  Thomas Triplet; Matthew D Shortridge; Mark A Griep; Jaime L Stark; Robert Powers; Peter Revesz
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

7.  Development of human protein reference database as an initial platform for approaching systems biology in humans.

Authors:  Suraj Peri; J Daniel Navarro; Ramars Amanchy; Troels Z Kristiansen; Chandra Kiran Jonnalagadda; Vineeth Surendranath; Vidya Niranjan; Babylakshmi Muthusamy; T K B Gandhi; Mads Gronborg; Nieves Ibarrola; Nandan Deshpande; K Shanker; H N Shivashankar; B P Rashmi; M A Ramya; Zhixing Zhao; K N Chandrika; N Padma; H C Harsha; A J Yatish; M P Kavitha; Minal Menezes; Dipanwita Roy Choudhury; Shubha Suresh; Neelanjana Ghosh; R Saravana; Sreenath Chandran; Subhalakshmi Krishna; Mary Joy; Sanjeev K Anand; V Madavan; Ansamma Joseph; Guang W Wong; William P Schiemann; Stefan N Constantinescu; Lily Huang; Roya Khosravi-Far; Hanno Steen; Muneesh Tewari; Saghi Ghaffari; Gerard C Blobe; Chi V Dang; Joe G N Garcia; Jonathan Pevsner; Ole N Jensen; Peter Roepstorff; Krishna S Deshpande; Arul M Chinnaiyan; Ada Hamosh; Aravinda Chakravarti; Akhilesh Pandey
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

8.  Distribution of immunodeficiency fact files with XML--from Web to WAP.

Authors:  Jouni Väliaho; Pentti Riikonen; Mauno Vihinen
Journal:  BMC Med Inform Decis Mak       Date:  2005-06-26       Impact factor: 2.796

9.  MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.

Authors:  Irena Spasić; Warwick B Dunn; Giles Velarde; Andy Tseng; Helen Jenkins; Nigel Hardy; Stephen G Oliver; Douglas B Kell
Journal:  BMC Bioinformatics       Date:  2006-06-05       Impact factor: 3.169

10.  BioBuilder as a database development and functional annotation platform for proteins.

Authors:  J Daniel Navarro; Naveen Talreja; Suraj Peri; B M Vrushabendra; B P Rashmi; N Padma; Vineeth Surendranath; Chandra Kiran Jonnalagadda; P S Kousthub; Nandan Deshpande; K Shanker; Akhilesh Pandey
Journal:  BMC Bioinformatics       Date:  2004-04-20       Impact factor: 3.169

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