Literature DB >> 12786398

Universal behavior of localization of residue fluctuations in globular proteins.

Yinhao Wu1, Xianzhang Yuan, Xia Gao, Haiping Fang, Jian Zi.   

Abstract

Localization properties of residue fluctuations in globular proteins are studied theoretically by using a Gaussian network model. Participation ratio for each residue fluctuation mode is calculated. It is found that the relationship between participation ratio and frequency is similar for all globular proteins, indicating a universal behavior in spite of their different size, shape, and architecture.

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Year:  2003        PMID: 12786398     DOI: 10.1103/PhysRevE.67.041909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Dynamics of the trimeric AcrB transporter protein inferred from a B-factor analysis of the crystal structure.

Authors:  W C Lu; C Z Wang; E W Yu; K M Ho
Journal:  Proteins       Date:  2006-01-01

2.  iGNM: a database of protein functional motions based on Gaussian Network Model.

Authors:  Lee-Wei Yang; Xiong Liu; Christopher J Jursa; Mark Holliman; A J Rader; Hassan A Karimi; Ivet Bahar
Journal:  Bioinformatics       Date:  2005-04-28       Impact factor: 6.937

3.  Structural Characterization and Function Prediction of Immunoglobulin-like Fold in Cell Adhesion and Cell Signaling.

Authors:  Jiawen Chen; Bo Wang; Yinghao Wu
Journal:  J Chem Inf Model       Date:  2018-01-30       Impact factor: 4.956

  3 in total

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