Literature DB >> 12773184

Archaeal DNA repair: paradigms and puzzles.

M F White1.   

Abstract

It is now generally accepted that the Archaea share many similarities in their information-processing pathways with eukarya. Archaeal and eukaryal DNA replication and transcriptional machineries show particularly striking similarities, and the archaeal processes have been used extensively as simpler models of the much more complex eukaryal ones. Archaeal DNA-repair pathways are not yet well characterized, and their relationship with repair pathways in bacteria and eukarya are still open to question. There are also strong distinctions between the major subdivisions crenarchaea and euryarchaea within the archaeal domain. This review highlights some of these similarities and differences using specific examples arising from our studies of the double-stranded and single-stranded DNA-binding proteins and the repair endonuclease XPF in the crenarchaeote Sulfolobus solfataricus.

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Year:  2003        PMID: 12773184     DOI: 10.1042/bst0310690.

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  28 in total

1.  A bipolar DNA helicase gene, herA, clusters with rad50, mre11 and nurA genes in thermophilic archaea.

Authors:  F Constantinesco; P Forterre; E V Koonin; L Aravind; C Elie
Journal:  Nucleic Acids Res       Date:  2004-02-27       Impact factor: 16.971

2.  Single-stranded DNA binding activity of XPBI, but not XPBII, from Sulfolobus tokodaii causes double-stranded DNA melting.

Authors:  Xiaoqing Ma; Ye Hong; Wenyuan Han; Duohong Sheng; Jinfeng Ni; Guihua Hou; Yulong Shen
Journal:  Extremophiles       Date:  2010-12-05       Impact factor: 2.395

3.  Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition.

Authors:  Matthew Newman; Judith Murray-Rust; John Lally; Jana Rudolf; Andrew Fadden; Philip P Knowles; Malcolm F White; Neil Q McDonald
Journal:  EMBO J       Date:  2005-02-17       Impact factor: 11.598

4.  Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1.

Authors:  Oleg V Tsodikov; Jacquelin H Enzlin; Orlando D Schärer; Tom Ellenberger
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-02       Impact factor: 11.205

5.  Characterization of an ATP-dependent DNA ligase from the acidophilic archaeon "Ferroplasma acidarmanus" Fer1.

Authors:  Brian R Jackson; Catherine Noble; Manuel Lavesa-Curto; Philip L Bond; Richard P Bowater
Journal:  Extremophiles       Date:  2006-11-30       Impact factor: 2.395

6.  The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota.

Authors:  Lanming Chen; Kim Brügger; Marie Skovgaard; Peter Redder; Qunxin She; Elfar Torarinsson; Bo Greve; Mariana Awayez; Arne Zibat; Hans-Peter Klenk; Roger A Garrett
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

7.  A junction branch point adjacent to a DNA backbone nick directs substrate cleavage by Saccharomyces cerevisiae Mus81-Mms4.

Authors:  Kirk Tevebaugh Ehmsen; Wolf-Dietrich Heyer
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

8.  Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus.

Authors:  Vincenzo Salerno; Alessandra Napoli; Malcolm F White; Mosè Rossi; Maria Ciaramella
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

9.  Alkylation damage repair protein O6-alkylguanine-DNA alkyltransferase from the hyperthermophiles Aquifex aeolicus and Archaeoglobus fulgidus.

Authors:  Sreenivas Kanugula; Anthony E Pegg
Journal:  Biochem J       Date:  2003-10-15       Impact factor: 3.857

10.  Mechanism of the very efficient quenching of tryptophan fluorescence in human gamma D- and gamma S-crystallins: the gamma-crystallin fold may have evolved to protect tryptophan residues from ultraviolet photodamage.

Authors:  Jiejin Chen; Patrik R Callis; Jonathan King
Journal:  Biochemistry       Date:  2009-05-05       Impact factor: 3.162

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