Literature DB >> 12767834

The effects of mutations on motions of side-chains in protein L studied by 2H NMR dynamics and scalar couplings.

Oscar Millet1, Anthony Mittermaier, David Baker, Lewis E Kay.   

Abstract

Recently developed 2H spin relaxation experiments are applied to study the dynamics of methyl-containing side-chains in the B1 domain of protein L and in a pair of point mutants of the domain, F22L and A20V. X-ray and NMR studies of the three variants of protein L studied here establish that their structures are very similar, despite the fact that the F22L mutant is 3.2kcal/mol less stable. Measurements of methyl 2H spin relaxation rates, which probe dynamics on a picosecond-nanosecond time scale, and three-bond 3J(Cgamma-CO), 3J(Cgamma-N) and 3J(Calpha-Cdelta) scalar coupling constants, which are sensitive to motion spanning a wide range of time-scales, reveal changes in the magnitude of side-chain dynamics in response to mutation. Observed differences in the time-scale of motions between the variants have been related to changes in energetic barriers. Of interest, several of the residues with different motional properties across the variants are far from the site of mutation, suggesting the presence of long-range interactions within the protein that can be probed through studies of dynamics.

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Year:  2003        PMID: 12767834     DOI: 10.1016/s0022-2836(03)00471-6

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  25 in total

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2.  The response of internal dynamics to hydrophobic core mutations in the SH3 domain from the Fyn tyrosine kinase.

Authors:  Anthony Mittermaier; Lewis E Kay
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

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Review 5.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

6.  Intrinsic dynamics of the partly unstructured PX domain from the Sendai virus RNA polymerase cofactor P.

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7.  Anion modulation of the 1H/2H exchange rates in backbone amide protons monitored by NMR spectroscopy.

Authors:  Xavier Tadeo; David Castaño; Oscar Millet
Journal:  Protein Sci       Date:  2007-10-26       Impact factor: 6.725

8.  A simple model of backbone flexibility improves modeling of side-chain conformational variability.

Authors:  Gregory D Friedland; Anthony J Linares; Colin A Smith; Tanja Kortemme
Journal:  J Mol Biol       Date:  2008-05-11       Impact factor: 5.469

9.  Effect of subdomain interactions on methyl group dynamics in the hydrophobic core of villin headpiece protein.

Authors:  Liliya Vugmeyster; Tien Do; Dmitry Ostrovsky; Riqianq Fu
Journal:  Protein Sci       Date:  2013-12-03       Impact factor: 6.725

10.  Protein stabilization and the Hofmeister effect: the role of hydrophobic solvation.

Authors:  Xavier Tadeo; Blanca López-Méndez; David Castaño; Tamara Trigueros; Oscar Millet
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

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