Literature DB >> 12767134

Chemical markup, XML, and the World Wide Web. 4. CML schema.

Peter Murray-Rust1, Henry S Rzepa.   

Abstract

A revision to Chemical Markup Language (CML) is presented as a XML Schema compliant form, modularized into nonchemical and chemical components. STMML contains generic concepts for numeric data and scientific units, while CMLCore retains most of the chemical functionality of the original CML 1.0 and extends it by adding handlers for chemical substances, extended bonding models and names. We propose extension via new namespaced components for chemical queries, reactions, spectra, and computational chemistry. The conformance with XML schemas allows much greater control over datatyping, document validation, and structure.

Entities:  

Year:  2003        PMID: 12767134     DOI: 10.1021/ci0256541

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  18 in total

1.  A global resource for computational chemistry.

Authors:  Peter Murray-Rust; Henry S Rzepa; James J P Stewart; Yong Zhang
Journal:  J Mol Model       Date:  2005-07-21       Impact factor: 1.810

2.  XML-based approaches for the integration of heterogeneous bio-molecular data.

Authors:  Marco Mesiti; Ernesto Jiménez-Ruiz; Ismael Sanz; Rafael Berlanga-Llavori; Paolo Perlasca; Giorgio Valentini; David Manset
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

3.  Chemistry publication - making the revolution.

Authors:  Steven M Bachrach
Journal:  J Cheminform       Date:  2009-03-17       Impact factor: 5.514

4.  Basic primitives for molecular diagram sketching.

Authors:  Alex M Clark
Journal:  J Cheminform       Date:  2010-10-05       Impact factor: 5.514

5.  The semantics of Chemical Markup Language (CML) for computational chemistry : CompChem.

Authors:  Weerapong Phadungsukanan; Markus Kraft; Joe A Townsend; Peter Murray-Rust
Journal:  J Cheminform       Date:  2012-08-07       Impact factor: 5.514

6.  Open Babel: An open chemical toolbox.

Authors:  Noel M O'Boyle; Michael Banck; Craig A James; Chris Morley; Tim Vandermeersch; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2011-10-07       Impact factor: 5.514

7.  Adaptive informatics for multifactorial and high-content biological data.

Authors:  Bjorn L Millard; Mario Niepel; Michael P Menden; Jeremy L Muhlich; Peter K Sorger
Journal:  Nat Methods       Date:  2011-04-24       Impact factor: 28.547

8.  Mining chemical information from open patents.

Authors:  David M Jessop; Sam E Adams; Peter Murray-Rust
Journal:  J Cheminform       Date:  2011-10-14       Impact factor: 5.514

9.  Communication and re-use of chemical information in bioscience.

Authors:  Peter Murray-Rust; John B O Mitchell; Henry S Rzepa
Journal:  BMC Bioinformatics       Date:  2005-07-18       Impact factor: 3.169

10.  Redefining Cheminformatics with Intuitive Collaborative Mobile Apps.

Authors:  Alex M Clark; Sean Ekins; Antony J Williams
Journal:  Mol Inform       Date:  2012-07-04       Impact factor: 3.353

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