Literature DB >> 12765777

Bioinformatics in glycobiology.

I Marchal1, G Golfier, O Dugas, M Majed.   

Abstract

In comparison with genes and proteins, attention paid to oligosaccharides that modify proteins is still marginal. Accordingly, bioinformatics is so far poorly involved in glycobiology. Some initiatives have been taken, however, to collect in databases all glycobiology-relevant information or to design specific data mining algorithms to infer predictions or identify oligosaccharide structures. In this review, we make a non-exhaustive survey of the available glycobiology-related bioinformatic resources, focussing mainly on those resources that are available through the World Wide Web. Some well-curated databases are identified, but the development of specialised algorithms appears to be limited.

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Year:  2003        PMID: 12765777     DOI: 10.1016/s0300-9084(03)00068-3

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  6 in total

1.  Congruent strategies for carbohydrate sequencing. 3. OSCAR: an algorithm for assigning oligosaccharide topology from MSn data.

Authors:  Anthony J Lapadula; Philip J Hatcher; Andy J Hanneman; David J Ashline; Hailong Zhang; Vernon N Reinhold
Journal:  Anal Chem       Date:  2005-10-01       Impact factor: 6.986

2.  The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.

Authors:  Toshiaki Katayama; Kazuharu Arakawa; Mitsuteru Nakao; Keiichiro Ono; Kiyoko F Aoki-Kinoshita; Yasunori Yamamoto; Atsuko Yamaguchi; Shuichi Kawashima; Hong-Woo Chun; Jan Aerts; Bruno Aranda; Lord Hendrix Barboza; Raoul Jp Bonnal; Richard Bruskiewich; Jan C Bryne; José M Fernández; Akira Funahashi; Paul Mk Gordon; Naohisa Goto; Andreas Groscurth; Alex Gutteridge; Richard Holland; Yoshinobu Kano; Edward A Kawas; Arnaud Kerhornou; Eri Kibukawa; Akira R Kinjo; Michael Kuhn; Hilmar Lapp; Heikki Lehvaslaiho; Hiroyuki Nakamura; Yasukazu Nakamura; Tatsuya Nishizawa; Chikashi Nobata; Tamotsu Noguchi; Thomas M Oinn; Shinobu Okamoto; Stuart Owen; Evangelos Pafilis; Matthew Pocock; Pjotr Prins; René Ranzinger; Florian Reisinger; Lukasz Salwinski; Mark Schreiber; Martin Senger; Yasumasa Shigemoto; Daron M Standley; Hideaki Sugawara; Toshiyuki Tashiro; Oswaldo Trelles; Rutger A Vos; Mark D Wilkinson; William York; Christian M Zmasek; Kiyoshi Asai; Toshihisa Takagi
Journal:  J Biomed Semantics       Date:  2010-08-21

Review 3.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

4.  Development of Monoclonal Antibodies against CMP-N-Acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 (ST3Gal-I) Recombinant Protein Expressed in E. coli.

Authors:  Anuj Kumar Gupta; Parvinder Kaur; Harshada Patil; Pallavi Kadam; Paresh B Bhanushali; Manoj Chugh
Journal:  Biochem Res Int       Date:  2015-12-10

5.  Understanding the relationship between cotton fiber properties and non-cellulosic cell wall polysaccharides.

Authors:  Dhivyaa Rajasundaram; Jean-Luc Runavot; Xiaoyuan Guo; William G T Willats; Frank Meulewaeter; Joachim Selbig
Journal:  PLoS One       Date:  2014-11-10       Impact factor: 3.240

Review 6.  Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy.

Authors:  Manikandan Muthu; Sechul Chun; Judy Gopal; Vimala Anthonydhason; Steve W Haga; Anna Jacintha Prameela Devadoss; Jae-Wook Oh
Journal:  Int J Mol Sci       Date:  2020-12-08       Impact factor: 5.923

  6 in total

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