Literature DB >> 12761070

ACGT-a comparative genomics tool.

Tao Xie1, Leroy Hood.   

Abstract

SUMMARY: ACGT (a comparative genomics tool) is a genomic DNA sequence comparison viewer and analyzer. It can read a pair of DNA sequences in GenBank, Embl or Fasta formats, with or without a comparison file, and provide users with many options to view and analyze the similarities between the input sequences. It is written in Java and can be run on Unix, Linux and Windows platforms. AVAILABILITY: The ACGT program is freely available with documentation and examples at website: http://db.systemsbiology.net/projects/local/mhc/acgt/

Entities:  

Mesh：

Year:  2003        PMID： 12761070     DOI： 10.1093/bioinformatics/btg121

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  5 in total

1.  Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse.

Authors:  Tao Xie; Lee Rowen; Begoña Aguado; Mary Ellen Ahearn; Anup Madan; Shizhen Qin; R Duncan Campbell; Leroy Hood
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

2.  GenomeBlast: a web tool for small genome comparison.

Authors:  Guoqing Lu; Liying Jiang; Resa M K Helikar; Thaine W Rowley; Luwen Zhang; Xianfeng Chen; Etsuko N Moriyama
Journal:  BMC Bioinformatics       Date:  2006-12-12       Impact factor: 3.169

3.  Computational biology methods and their application to the comparative genomics of endocellular symbiotic bacteria of insects.

Authors:  Jennifer Commins; Christina Toft; Mario A Fares
Journal:  Biol Proced Online       Date:  2009-03-11       Impact factor: 3.244

4.  GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes.

Authors:  Srikanth Celamkoti; Sashidhara Kundeti; Anjan Purkayastha; Raja Mazumder; Charles Buck; Donald Seto
Journal:  BMC Bioinformatics       Date:  2004-05-05       Impact factor: 3.169

5.  GenomeMatcher: a graphical user interface for DNA sequence comparison.

Authors:  Yoshiyuki Ohtsubo; Wakako Ikeda-Ohtsubo; Yuji Nagata; Masataka Tsuda
Journal:  BMC Bioinformatics       Date:  2008-09-16       Impact factor: 3.169
  5 in total

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