Literature DB >> 12755865

How much effort is required to isolate nuclear microsatellites from plants?

J Squirrell1, P M Hollingsworth, M Woodhead, J Russell, A J Lowe, M Gibby, W Powell.   

Abstract

The attributes of codominance, reproducibility and high resolution have all contributed towards the current popularity of nuclear microsatellites as genetic markers in molecular ecological studies. One of their major drawbacks, however, is the development phase required to obtain working primers for a given study species. To facilitate project planning, we have reviewed the literature to quantify the workload involved in isolating nuclear microsatellites from plants. We highlight the attrition of loci at each stage in the process, and the average effort required to obtain 10 working microsatellite primer pairs.

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Year:  2003        PMID: 12755865     DOI: 10.1046/j.1365-294x.2003.01825.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  82 in total

1.  An improved technique for isolating codominant compound microsatellite markers.

Authors:  Chunlan L Lian; Md Abdul Wadud; Qifang Geng; Kenichiro Shimatani; Taizo Hogetsu
Journal:  J Plant Res       Date:  2006-04-25       Impact factor: 2.629

2.  Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags.

Authors:  Dainis Rungis; Yanik Bérubé; Jun Zhang; Steven Ralph; Carol E Ritland; Brian E Ellis; Carl Douglas; Jörg Bohlmann; Kermit Ritland
Journal:  Theor Appl Genet       Date:  2004-10       Impact factor: 5.699

3.  Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish.

Authors:  Shufen Wang; Xiufeng Wang; Qiwei He; Xianxian Liu; Wenling Xu; Libin Li; Jianwei Gao; Fengde Wang
Journal:  Plant Cell Rep       Date:  2012-04-04       Impact factor: 4.570

4.  Developing new SSR markers from ESTs of pea (Pisum sativum L.).

Authors:  Ya-ming Gong; Sheng-chun Xu; Wei-hua Mao; Qi-zan Hu; Gu-wen Zhang; Ju Ding; Ya-dan Li
Journal:  J Zhejiang Univ Sci B       Date:  2010-09       Impact factor: 3.066

5.  Microsatellite analysis of three phylogenetic species of Paracoccidioides brasiliensis.

Authors:  Daniel R Matute; Victoria E Sepulveda; Lina M Quesada; Gustavo H Goldman; John W Taylor; Angela Restrepo; Juan G McEwen
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

6.  Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.

Authors:  Robert Kofler; Jan Bartos; Li Gong; Gertraud Stift; Pavla Suchánková; Hana Simková; Maria Berenyi; Kornel Burg; Jaroslav Dolezel; Tamas Lelley
Journal:  Theor Appl Genet       Date:  2008-07-15       Impact factor: 5.699

7.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

8.  Development of microsatellite markers and analysis of intraspecific genetic variability in chickpea (Cicer arietinum L.).

Authors:  Niroj Kumar Sethy; Bhumika Shokeen; Keith J Edwards; Sabhyata Bhatia
Journal:  Theor Appl Genet       Date:  2006-03-14       Impact factor: 5.699

9.  Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense.

Authors:  Yu Yu; Daojun Yuan; Shaoguang Liang; Ximei Li; Xiaqing Wang; Zhongxu Lin; Xianlong Zhang
Journal:  BMC Genomics       Date:  2011-01-09       Impact factor: 3.969

10.  A microsatellite map of white clover.

Authors:  B Barrett; A Griffiths; M Schreiber; N Ellison; C Mercer; J Bouton; B Ong; J Forster; T Sawbridge; G Spangenberg; G Bryan; D Woodfield
Journal:  Theor Appl Genet       Date:  2004-04-22       Impact factor: 5.699

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