Literature DB >> 12755603

Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species.

Eugene S Vysotski1, Zhi-Jie Liu, Svetlana V Markova, John R Blinks, Lu Deng, Ludmila A Frank, Michelle Herko, Natalia P Malikova, John P Rose, Bi-Cheng Wang, John Lee.   

Abstract

Obelin from the hydroid Obelia longissima and aequorin are members of a subfamily of Ca(2+)-regulated photoproteins that is a part of the larger EF-hand calcium binding protein family. On the addition of Ca(2+), obelin generates a blue bioluminescence emission (lambda(max) = 485 nm) as the result of the oxidative decarboxylation of the bound substrate, coelenterazine. The W92F obelin mutant is noteworthy because of the unusually high speed with which it responds to sudden changes of [Ca(2+)] and because it emits violet light rather than blue due to a prominent band with lambda(max) = 405 nm. Increase of pH in the range from 5.5 to 8.5 and using D(2)O both diminish the contribution of the 405 nm band, indicating that excited state proton transfer is involved. Fluorescence model studies have suggested the origin of the 485 nm emission as the excited state of an anion of coelenteramide, the bioluminescence reaction product, and 405 nm from the excited neutral state. Assuming that the dimensions of the substrate binding cavity do not change during the excited state formation, a His22 residue within hydrogen bonding distance to the 6-(p-hydroxy)-phenyl group of the excited coelenteramide is a likely candidate for accepting the phenol proton to produce an ion-pair excited state, in support of recent suggestions for the bioluminescence emitting state. The proton transfer could be impeded by removal of the Trp92 H-bond, resulting in strong enhancement of a 405 nm band giving the violet color of bioluminescence. Comparative analysis of 3D structures of the wild-type (WT) and W92F obelins reveals that there are structural displacements of certain key Ca(2+)-ligating residues in the loops of the two C-terminal EF hands as well as clear differences in hydrogen bond networks in W92F. For instance, the hydrogen bond between the side-chain oxygen atom of Asp169 and the main-chain nitrogen of Arg112 binds together the incoming alpha-helix of loop III and the exiting alpha-helix of loop IV in WT, providing probably concerted changes in these EF hands on calcium binding. But this linkage is not found in W92F obelin. These differences apparently do not change the overall affinity to calcium of W92F obelin but may account for the kinetic differences between the WT and mutant obelins. From analysis of the hydrogen bond network in the coelenterazine binding cavity, it is proposed that the trigger for bioluminescence reaction in these Ca(2+)-regulated photoproteins may be a shift of the hydrogen bond donor-acceptor separations around the coelenterazine-2-hydroperoxy substrate, initiated by small spatial adjustment of the exiting alpha-helix of loop IV.

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Year:  2003        PMID: 12755603     DOI: 10.1021/bi027258h

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Crystal structure of obelin after Ca2+-triggered bioluminescence suggests neutral coelenteramide as the primary excited state.

Authors:  Zhi-Jie Liu; Galina A Stepanyuk; Eugene S Vysotski; John Lee; Svetlana V Markova; Natalia P Malikova; Bi-Cheng Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-08       Impact factor: 11.205

2.  Structure-function studies on the active site of the coelenterazine-dependent luciferase from Renilla.

Authors:  Jongchan Woo; Matthew H Howell; Albrecht G von Arnim
Journal:  Protein Sci       Date:  2008-04       Impact factor: 6.725

3.  Cloning, sequencing, expression and structural investigation of mnemiopsin from Mnemiopsis leidyi: an attempt toward understanding Ca2+-regulated photoproteins.

Authors:  Mahmoud Reza Aghamaali; Vahab Jafarian; Reyhaneh Sariri; Maryam Molakarimi; Behnam Rasti; Majid Taghdir; Reza Hasan Sajedi; Saman Hosseinkhani
Journal:  Protein J       Date:  2011-12       Impact factor: 2.371

4.  Reaction mechanism of the bioluminescent protein mnemiopsin1 revealed by X-ray crystallography and QM/MM simulations.

Authors:  Maryam Molakarimi; Michael A Gorman; Ammar Mohseni; Zaiddodine Pashandi; Majid Taghdir; Hossein Naderi-Manesh; Reza H Sajedi; Michael W Parker
Journal:  J Biol Chem       Date:  2018-11-12       Impact factor: 5.157

5.  Modulating the bioluminescence emission of photoproteins by in vivo site-directed incorporation of non-natural amino acids.

Authors:  Laura Rowe; Mark Ensor; Ryan Mehl; Sylvia Daunert
Journal:  ACS Chem Biol       Date:  2010-05-21       Impact factor: 5.100

Review 6.  Ca2+-regulated photoproteins: effective immunoassay reporters.

Authors:  Ludmila A Frank
Journal:  Sensors (Basel)       Date:  2010-12-10       Impact factor: 3.576

7.  QM/MM simulations provide insight into the mechanism of bioluminescence triggering in ctenophore photoproteins.

Authors:  Maryam Molakarimi; Ammar Mohseni; Majid Taghdir; Zaiddodine Pashandi; Michael A Gorman; Michael W Parker; Hossein Naderi-Manesh; Reza H Sajedi
Journal:  PLoS One       Date:  2017-08-04       Impact factor: 3.240

  7 in total

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