Literature DB >> 12753098

Automated quantification and reconstruction of collagen matrix from 3D confocal datasets.

J Wu1, B Rajwa, D L Filmer, C M Hoffmann, B Yuan, C Chiang, J Sturgis, J P Robinson.   

Abstract

The geometrical structure of fibrous extracellular matrix (ECM) impacts on its biological function. In this report, we demonstrate a new algorithm designed to extract quantitative structural information about individual collagen fibres (orientation, length and diameter) from 3D backscattered-light confocal images of collagen gels. The computed quantitative data allowed us to create surface-rendered 3D images of the investigated sample.

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Year:  2003        PMID: 12753098     DOI: 10.1046/j.1365-2818.2003.01191.x

Source DB:  PubMed          Journal:  J Microsc        ISSN: 0022-2720            Impact factor:   1.758


  16 in total

1.  Second harmonic generation microscopy for quantitative analysis of collagen fibrillar structure.

Authors:  Xiyi Chen; Oleg Nadiarynkh; Sergey Plotnikov; Paul J Campagnola
Journal:  Nat Protoc       Date:  2012-03-08       Impact factor: 13.491

2.  Three-dimensional volume reconstruction of extracellular matrix proteins in uveal melanoma from fluorescent confocal laser scanning microscope images.

Authors:  P Bajcsy; S-C Lee; A Lin; R Folberg
Journal:  J Microsc       Date:  2006-01       Impact factor: 1.758

3.  Quantification of collagen fiber structure using second harmonic generation imaging and two-dimensional discrete Fourier transform analysis: Application to the human optic nerve head.

Authors:  Jacek K Pijanka; Petar P Markov; Dan Midgett; Neil G Paterson; Nick White; Emma J Blain; Thao D Nguyen; Harry A Quigley; Craig Boote
Journal:  J Biophotonics       Date:  2019-01-10       Impact factor: 3.207

4.  Robust pore size analysis of filamentous networks from three-dimensional confocal microscopy.

Authors:  Walter Mickel; Stefan Münster; Louise M Jawerth; David A Vader; David A Weitz; Adrian P Sheppard; Klaus Mecke; Ben Fabry; Gerd E Schröder-Turk
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

5.  Fast two-dimensional bubble analysis of biopolymer filamentous networks pore size from confocal microscopy thin data stacks.

Authors:  Matteo Molteni; Davide Magatti; Barbara Cardinali; Mattia Rocco; Fabio Ferri
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

6.  Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer.

Authors:  Jeremy S Bredfeldt; Yuming Liu; Carolyn A Pehlke; Matthew W Conklin; Joseph M Szulczewski; David R Inman; Patricia J Keely; Robert D Nowak; Thomas R Mackie; Kevin W Eliceiri
Journal:  J Biomed Opt       Date:  2014-01       Impact factor: 3.170

7.  Fully automated, quantitative, noninvasive assessment of collagen fiber content and organization in thick collagen gels.

Authors:  Christopher Bayan; Jonathan M Levitt; Eric Miller; David Kaplan; Irene Georgakoudi
Journal:  J Appl Phys       Date:  2009-05-19       Impact factor: 2.546

Review 8.  Techniques to assess bone ultrastructure organization: orientation and arrangement of mineralized collagen fibrils.

Authors:  Marios Georgiadis; Ralph Müller; Philipp Schneider
Journal:  J R Soc Interface       Date:  2016-06       Impact factor: 4.118

9.  Engineered pullulan-collagen composite dermal hydrogels improve early cutaneous wound healing.

Authors:  Victor W Wong; Kristine C Rustad; Michael G Galvez; Evgenios Neofytou; Evgenios Neofyotou; Jason P Glotzbach; Michael Januszyk; Melanie R Major; Michael Sorkin; Michael T Longaker; Jayakumar Rajadas; Geoffrey C Gurtner
Journal:  Tissue Eng Part A       Date:  2010-11-17       Impact factor: 3.845

10.  Quantification of the temporal evolution of collagen orientation in mechanically conditioned engineered cardiovascular tissues.

Authors:  Mirjam P Rubbens; Anita Driessen-Mol; Ralf A Boerboom; Marc M J Koppert; Hans C van Assen; Bart M TerHaar Romeny; Frank P T Baaijens; Carlijn V C Bouten
Journal:  Ann Biomed Eng       Date:  2009-05-05       Impact factor: 3.934

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