Literature DB >> 12750317

Horizontal acquisition of divergent chromosomal DNA in bacteria: effects of mutator phenotypes.

Jeffrey P Townsend1, Kaare M Nielsen, Daniel S Fisher, Daniel L Hartl.   

Abstract

We examine the potential beneficial effects of the expanded access to environmental DNA offered by mutators on the adaptive potential of bacterial populations. Using parameters from published studies of recombination in E. coli, we find that the presence of mutators has the potential to greatly enhance bacterial population adaptation when compared to populations without mutators. In one specific example, for which three specific amino acid substitutions are required for adaptation to occur in a 300-amino-acid protein, we found a 3500-fold increase in the rate of adaptation. The probability of a beneficial acquisition decreased if more amino acid changes, or integration of longer DNA fragments, were required for adaptation. The model also predicts that mutators are more likely than nonmutator phenotypes to acquire genetic variability from a more diverged set of donor bacteria. Bacterial populations harboring mutators in a sequence heterogeneous environment are predicted to acquire most of their DNA conferring adaptation in the range of 13-30% divergence, whereas nonmutator phenotypes become adapted after recombining with more homogeneous sequences of 7-21% divergence. We conclude that mutators can accelerate bacterial adaptation when desired genetic variability is present within DNA fragments of up to approximately 30% divergence.

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Year:  2003        PMID: 12750317      PMCID: PMC1462543     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  39 in total

1.  DNA sequence similarity requirements for interspecific recombination in Bacillus.

Authors:  J Majewski; F M Cohan
Journal:  Genetics       Date:  1999-12       Impact factor: 4.562

Review 2.  Lateral gene transfer and the nature of bacterial innovation.

Authors:  H Ochman; J G Lawrence; E A Groisman
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

3.  Evolutionary implications of the frequent horizontal transfer of mismatch repair genes.

Authors:  E Denamur; G Lecointre; P Darlu; O Tenaillon; C Acquaviva; C Sayada; I Sunjevaric; R Rothstein; J Elion; F Taddei; M Radman; I Matic
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

Review 4.  Population structure and evolutionary dynamics of pathogenic bacteria.

Authors:  J M Smith; E J Feil; N H Smith
Journal:  Bioessays       Date:  2000-12       Impact factor: 4.345

5.  Mutators and sex in bacteria: conflict between adaptive strategies.

Authors:  O Tenaillon; H Le Nagard; B Godelle; F Taddei
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

6.  Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation.

Authors:  J Majewski; P Zawadzki; P Pickerill; F M Cohan; C G Dowson
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

7.  Natural transformation of Acinetobacter sp. strain BD413 with cell lysates of Acinetobacter sp., Pseudomonas fluorescens, and Burkholderia cepacia in soil microcosms.

Authors:  K M Nielsen; K Smalla; J D van Elsas
Journal:  Appl Environ Microbiol       Date:  2000-01       Impact factor: 4.792

8.  Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains.

Authors:  E W Brown; J E LeClerc; B Li; W L Payne; T A Cebula
Journal:  J Bacteriol       Date:  2001-03       Impact factor: 3.490

9.  High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.

Authors:  A Oliver; R Cantón; P Campo; F Baquero; J Blázquez
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

10.  The consequences of growth of a mutator strain of Escherichia coli as measured by loss of function among multiple gene targets and loss of fitness.

Authors:  P Funchain; A Yeung; J L Stewart; R Lin; M M Slupska; J H Miller
Journal:  Genetics       Date:  2000-03       Impact factor: 4.562

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  19 in total

1.  Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at "Evolution Canyons" I and II, Israel.

Authors:  Johannes Sikorski; Eviatar Nevo
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-25       Impact factor: 11.205

2.  Searching for species in haloarchaea.

Authors:  R Thane Papke; Olga Zhaxybayeva; Edward J Feil; Katrin Sommerfeld; Denise Muise; W Ford Doolittle
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-21       Impact factor: 11.205

3.  Mismatch Repair Incompatibilities in Diverse Yeast Populations.

Authors:  Duyen T Bui; Anne Friedrich; Najla Al-Sweel; Gianni Liti; Joseph Schacherer; Charles F Aquadro; Eric Alani
Journal:  Genetics       Date:  2017-02-13       Impact factor: 4.562

4.  Increased mutation frequencies in Escherichia coli isolates harboring extended-spectrum beta-lactamases.

Authors:  María-Rosario Baquero; Juan Carlos Galán; María del Carmen Turrientes; Rafael Cantón; Teresa M Coque; José Luis Martínez; Fernando Baquero
Journal:  Antimicrob Agents Chemother       Date:  2005-11       Impact factor: 5.191

5.  Genomics and the bacterial species problem.

Authors:  W Ford Doolittle; R Thane Papke
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

6.  Impact of mutS inactivation on foreign DNA acquisition by natural transformation in Pseudomonas stutzeri.

Authors:  Petra Meier; Wilfried Wackernagel
Journal:  J Bacteriol       Date:  2005-01       Impact factor: 3.490

7.  Sexual isolation in Acinetobacter baylyi is locus-specific and varies 10,000-fold over the genome.

Authors:  Jessica L Ray; Klaus Harms; Odd-Gunnar Wikmark; Irina Starikova; Pål J Johnsen; Kaare M Nielsen
Journal:  Genetics       Date:  2009-05-27       Impact factor: 4.562

8.  Incompatibilities in Mismatch Repair Genes MLH1-PMS1 Contribute to a Wide Range of Mutation Rates in Human Isolates of Baker's Yeast.

Authors:  Vandana Raghavan; Duyen T Bui; Najla Al-Sweel; Anne Friedrich; Joseph Schacherer; Charles F Aquadro; Eric Alani
Journal:  Genetics       Date:  2018-10-22       Impact factor: 4.562

9.  Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer.

Authors:  Talima Pearson; Philip Giffard; Stephen Beckstrom-Sternberg; Raymond Auerbach; Heidie Hornstra; Apichai Tuanyok; Erin P Price; Mindy B Glass; Benjamin Leadem; James S Beckstrom-Sternberg; Gerard J Allan; Jeffrey T Foster; David M Wagner; Richard T Okinaka; Siew Hoon Sim; Ofori Pearson; Zaining Wu; Jean Chang; Rajinder Kaul; Alex R Hoffmaster; Thomas S Brettin; Richard A Robison; Mark Mayo; Jay E Gee; Patrick Tan; Bart J Currie; Paul Keim
Journal:  BMC Biol       Date:  2009-11-18       Impact factor: 7.431

10.  Role of mutation in Pseudomonas aeruginosa biofilm development.

Authors:  Tim C R Conibear; Samuel L Collins; Jeremy S Webb
Journal:  PLoS One       Date:  2009-07-16       Impact factor: 3.240

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