Literature DB >> 12748210

Microarray analysis: a novel research tool for cardiovascular scientists and physicians.

C Napoli1, L O Lerman, V Sica, A Lerman, G Tajana, F de Nigris.   

Abstract

The massive increase in information on the human DNA sequence and the development of new technologies will have a profound impact on the diagnosis and treatment of cardiovascular diseases. The microarray is a micro-hybridisation based assay. The filter, called microchip or chip, is a special kind of membrane in which are spotted several thousands of oligonucleotides of cDNA fragments coding for known genes or expressed sequence tags. The resulting hybridisation signal on the chip is analysed by a fluorescent scanner and processed with a software package utilising the information on the oligonucleotide or cDNA map of the chip to generate a list of relative gene expression. Microarray technology can be used for many different purposes, most prominently to measure differential gene expression, variations in gene sequence (by analysing the genome of mutant phenotypes), or more recently, the entire binding site for transcription factors. Measurements of gene expression have the advantage of providing all available sequence information for any given experimental design and data interpretation in pursuit of biological understanding. This research tool will contribute to radically changing our understanding of cardiovascular diseases.

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Year:  2003        PMID: 12748210      PMCID: PMC1767682          DOI: 10.1136/heart.89.6.597

Source DB:  PubMed          Journal:  Heart        ISSN: 1355-6037            Impact factor:   5.994


  80 in total

Review 1.  Advances in protein microarray technology for protein expression and interaction profiling.

Authors:  B B Haab
Journal:  Curr Opin Drug Discov Devel       Date:  2001-01

2.  Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects.

Authors:  G C Tseng; M K Oh; L Rohlin; J C Liao; W H Wong
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  Microarrays : managing the data deluge.

Authors:  J S Rao; M Bond
Journal:  Circ Res       Date:  2001-06-22       Impact factor: 17.367

4.  DNA microarray analysis of gene expression in endothelial cells in response to 24-h shear stress.

Authors:  B P Chen; Y S Li; Y Zhao; K D Chen; S Li; J Lao; S Yuan; J Y Shyy; S Chien
Journal:  Physiol Genomics       Date:  2001-10-10       Impact factor: 3.107

5.  Cardiovascular genomics: estimating the total number of genes expressed in the human cardiovascular system.

Authors:  A A Dempsey; V J Dzau; C C Liew
Journal:  J Mol Cell Cardiol       Date:  2001-10       Impact factor: 5.000

6.  Identifying regulatory networks by combinatorial analysis of promoter elements.

Authors:  Y Pilpel; P Sudarsanam; G M Church
Journal:  Nat Genet       Date:  2001-10       Impact factor: 38.330

7.  DNA microarray reveals changes in gene expression of shear stressed human umbilical vein endothelial cells.

Authors:  S M McCormick; S G Eskin; L V McIntire; C L Teng; C M Lu; C G Russell; K K Chittur
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

8.  Escherichia coli Braun lipoprotein induces a lipopolysaccharide-like endotoxic response from primary human endothelial cells.

Authors:  P O Neilsen; G A Zimmerman; T M McIntyre
Journal:  J Immunol       Date:  2001-11-01       Impact factor: 5.422

Review 9.  Functional genomics of oxidant-induced lung injury.

Authors:  G D Leikauf; S A McDowell; C J Bachurski; B J Aronow; K Gammon; S C Wesselkamper; W Hardie; J S Wiest; J E Leikauf; T R Korfhagen; D R Prows
Journal:  Adv Exp Med Biol       Date:  2001       Impact factor: 2.622

10.  Human endothelial cell response to gram-negative lipopolysaccharide assessed with cDNA microarrays.

Authors:  B Zhao; R A Bowden; S A Stavchansky; P D Bowman
Journal:  Am J Physiol Cell Physiol       Date:  2001-11       Impact factor: 4.249

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  10 in total

Review 1.  Polymorphisms in endothelial nitric oxide synthase and carotid artery atherosclerosis.

Authors:  Claudio Napoli; Louis J Ignarro
Journal:  J Clin Pathol       Date:  2006-07-12       Impact factor: 3.411

Review 2.  Novel features of nitric oxide, endothelial nitric oxide synthase, and atherosclerosis.

Authors:  Louis J Ignarro; Claudio Napoli
Journal:  Curr Diab Rep       Date:  2005-02       Impact factor: 4.810

3.  MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer.

Authors:  Riina Kuuselo; Kimmo Savinainen; Saana Sandström; Reija Autio; Anne Kallioniemi
Journal:  Int J Cancer       Date:  2011-03-25       Impact factor: 7.396

4.  Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.

Authors:  Valerio Costa; Claudia Angelini; Luciana D'Apice; Margherita Mutarelli; Amelia Casamassimi; Linda Sommese; Maria Assunta Gallo; Marianna Aprile; Roberta Esposito; Luigi Leone; Aldo Donizetti; Stefania Crispi; Monica Rienzo; Berardo Sarubbi; Raffaele Calabrò; Marco Picardi; Paola Salvatore; Teresa Infante; Piergiuseppe De Berardinis; Claudio Napoli; Alfredo Ciccodicola
Journal:  PLoS One       Date:  2011-04-20       Impact factor: 3.240

Review 5.  Novel features of nitric oxide, endothelial nitric oxide synthase, and atherosclerosis.

Authors:  Louis J Ignarro; Claudio Napoli
Journal:  Curr Atheroscler Rep       Date:  2004-07       Impact factor: 5.113

6.  Effect of simulated microgravity on oxidation-sensitive gene expression in PC12 cells.

Authors:  Ohwon Kwon; Maureen Sartor; Craig R Tomlinson; Ronald W Millard; Mark E Olah; John M Sankovic; Rupak K Banerjee
Journal:  Adv Space Res       Date:  2006       Impact factor: 2.152

Review 7.  Gene expression analysis of cardiovascular diseases: novel insights into biology and clinical applications.

Authors:  David Seo; Geoffrey S Ginsburg; Pascal J Goldschmidt-Clermont
Journal:  J Am Coll Cardiol       Date:  2006-06-23       Impact factor: 24.094

8.  Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males.

Authors:  Peter C Charles; Brian D Alder; Eleanor G Hilliard; Jonathan C Schisler; Robert E Lineberger; Joel S Parker; Sabeen Mapara; Samuel S Wu; Andrea Portbury; Cam Patterson; George A Stouffer
Journal:  BMC Med Genomics       Date:  2008-08-18       Impact factor: 3.063

9.  Regulation of Cellular Metabolism and Cytokines by the Medicinal Herb Feverfew in the Human Monocytic THP-1 Cells.

Authors:  Chin-Fu Chen; Chun-Huai Cheng
Journal:  Evid Based Complement Alternat Med       Date:  2007-06-11       Impact factor: 2.629

Review 10.  The Human Explanted Heart Program: A translational bridge for cardiovascular medicine.

Authors:  Hao Zhang; Anissa Viveiros; Anish Nikhanj; Quynh Nguyen; Kaiming Wang; Wei Wang; Darren H Freed; John C Mullen; Roderick MacArthur; Daniel H Kim; Wayne Tymchak; Consolato M Sergi; Zamaneh Kassiri; Shaohua Wang; Gavin Y Oudit
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2020-10-22       Impact factor: 5.187

  10 in total

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