Literature DB >> 12745090

Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition.

Yu-Dong Cai1, Kuo-Chen Chou.   

Abstract

In this paper, based on the approach by combining the "functional domain composition" [K.C. Chou, Y. D. Cai, J. Biol. Chem. 277 (2002) 45765] and the pseudo-amino acid composition [K.C. Chou, Proteins Struct. Funct. Genet. 43 (2001) 246; Correction Proteins Struct. Funct. Genet. 2044 (2001) 2060], the Nearest Neighbour Algorithm (NNA) was developed for predicting the protein subcellular location. Very high success rates were observed, suggesting that such a hybrid approach may become a useful high-throughput tool in the area of bioinformatics and proteomics.

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Year:  2003        PMID： 12745090     DOI： 10.1016/s0006-291x(03)00775-7

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN： 0006-291X            Impact factor:   3.575


  14 in total

1.  Using fourier spectrum analysis and pseudo amino acid composition for prediction of membrane protein types.

Authors:  Hui Liu; Jie Yang; Meng Wang; Li Xue; Kuo-Chen Chou
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2.  Prediction of protein structural classes using hybrid properties.

Authors:  Wenjin Li; Kao Lin; Kaiyan Feng; Yudong Cai
Journal:  Mol Divers       Date:  2008-10-25       Impact factor: 2.943

3.  Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins.

Authors:  Bing Niu; Yu-Huan Jin; Kai-Yan Feng; Wen-Cong Lu; Yu-Dong Cai; Guo-Zheng Li
Journal:  Mol Divers       Date:  2008-05-28       Impact factor: 2.943

4.  A knowledge-based method to predict the cooperative relationship between transcription factors.

Authors:  Lingyi Lu; Ziliang Qian; XiaoHe Shi; Haipeng Li; Yu-Dong Cai; Yixue Li
Journal:  Mol Divers       Date:  2009-07-10       Impact factor: 2.943

5.  Integrative identification of Arabidopsis mitochondrial proteome and its function exploitation through protein interaction network.

Authors:  Jian Cui; Jinghua Liu; Yuhua Li; Tieliu Shi
Journal:  PLoS One       Date:  2011-01-31       Impact factor: 3.240

6.  Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition.

Authors:  Lei Chen; Kai-Yan Feng; Yu-Dong Cai; Kuo-Chen Chou; Hai-Peng Li
Journal:  BMC Bioinformatics       Date:  2010-05-31       Impact factor: 3.169

7.  Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property.

Authors:  Tao Huang; Lei Chen; Yu-Dong Cai; Kuo-Chen Chou
Journal:  PLoS One       Date:  2011-09-28       Impact factor: 3.240

8.  pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.

Authors:  Deepak Sarda; Gek Huey Chua; Kuo-Bin Li; Arun Krishnan
Journal:  BMC Bioinformatics       Date:  2005-06-17       Impact factor: 3.169

9.  Classification of protein quaternary structure by functional domain composition.

Authors:  Xiaojing Yu; Chuan Wang; Yixue Li
Journal:  BMC Bioinformatics       Date:  2006-04-04       Impact factor: 3.169

10.  Esub8: a novel tool to predict protein subcellular localizations in eukaryotic organisms.

Authors:  Qinghua Cui; Tianzi Jiang; Bing Liu; Songde Ma
Journal:  BMC Bioinformatics       Date:  2004-05-27       Impact factor: 3.169
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