Literature DB >> 12740840

Hydrogen-hydrogen bonding: a stabilizing interaction in molecules and crystals.

Chérif F Matta1, Jesús Hernández-Trujillo, Ting-Hua Tang, Richard F W Bader.   

Abstract

Bond paths linking two bonded hydrogen atoms that bear identical or similar charges are found between the ortho-hydrogen atoms in planar biphenyl, between the hydrogen atoms bonded to the C1-C4 carbon atoms in phenanthrene and other angular polybenzenoids, and between the methyl hydrogen atoms in the cyclobutadiene, tetrahedrane and indacene molecules corseted with tertiary-tetra-butyl groups. It is shown that each such H-H interaction, rather than denoting the presence of "nonbonded steric repulsions", makes a stabilizing contribution of up to 10 kcal mol(-1) to the energy of the molecule in which it occurs. The quantum theory of atoms in molecules-the physics of an open system-demonstrates that while the approach of two bonded hydrogen atoms to a separation less than the sum of their van der Waals radii does result in an increase in the repulsive contributions to their energies, these changes are dominated by an increase in the magnitude of the attractive interaction of the protons with the electron density distribution, and the net result is a stabilizing change in the energy. The surface virial that determines the contribution to the total energy decrease resulting from the formation of the H-H interatomic surface is shown to account for the resulting stability. It is pointed out that H-H interactions must be ubiquitous, their stabilization energies contributing to the sublimation energies of hydrocarbon molecular crystals, as well as solid hydrogen. H-H bonding is shown to be distinct from "dihydrogen bonding", a form of hydrogen bonding with a hydridic hydrogen in the role of the base atom.

Entities:  

Year:  2003        PMID: 12740840     DOI: 10.1002/chem.200204626

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  41 in total

1.  NCIPLOT: a program for plotting non-covalent interaction regions.

Authors:  Julia Contreras-García; Erin R Johnson; Shahar Keinan; Robin Chaudret; Jean-Philip Piquemal; David N Beratan; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

2.  Quantum chemistry: Quadruply bonded carbon.

Authors:  Jörg Grunenberg
Journal:  Nat Chem       Date:  2012-02-21       Impact factor: 24.427

3.  Theoretical study of the interaction between 5-methylcytosine and acrylamide.

Authors:  Bo Na; Lihui Zhao; Zhicheng Liu
Journal:  J Mol Model       Date:  2012-05-17       Impact factor: 1.810

4.  Effects of the protonation state in the interaction of an HIV-1 reverse transcriptase (RT) amino acid, Lys101, and a non nucleoside RT inhibitor, GW420867X.

Authors:  Sérgio E Galembeck; F Matthias Bickelhaupt; Célia Fonseca Guerra; Eduardo Galembeck
Journal:  J Mol Model       Date:  2014-06-26       Impact factor: 1.810

5.  Roles of electrostatic interaction and dispersion in CH···CH, CH···π, and π···π ethylene dimers.

Authors:  Ye Cao; Ming Wah Wong
Journal:  J Mol Model       Date:  2014-03-28       Impact factor: 1.810

6.  The role of OH…O and CH…O hydrogen bonds and H…H interactions in ethanol/methanol-water heterohexamers.

Authors:  Sol M Mejía; Juan F Espinal; Matthew J L Mills; Fanor Mondragón
Journal:  J Mol Model       Date:  2016-07-14       Impact factor: 1.810

7.  Modulating weak intramolecular interactions through the formation of beryllium bonds: complexes between squaric acid and BeH2.

Authors:  M Merced Montero-Campillo; Al Mokhtar Lamsabhi; Otilia Mó; Manuel Yáñez
Journal:  J Mol Model       Date:  2012-10-09       Impact factor: 1.810

8.  Time-dependent density functional theory study of the excited-state dihydrogen bonding: clusters of 2-pyridone with diethylmethylsilane and triethylgermanium.

Authors:  Ning-Ning Wei; Ce Hao; Jiao-Jie Tan; Guangyan Zhao; Ruizhou Li; Zhilong Xiu; Jieshan Qiu
Journal:  J Mol Model       Date:  2010-11-24       Impact factor: 1.810

9.  Modeling biophysical and biological properties from the characteristics of the molecular electron density, electron localization and delocalization matrices, and the electrostatic potential.

Authors:  Chérif F Matta
Journal:  J Comput Chem       Date:  2014-04-29       Impact factor: 3.376

10.  Combined QTAIM and ETS-NOCV investigation of the interactions in ClnM[PhB(NtBu)2] complexes with M = Si & Ge (n = 0), As & Sb (n = 1), Te & Po (n = 2).

Authors:  Salima Lakehal; Aicha Lakehal; Malika Bouchagour; Christophe Morell; Henry Chermette
Journal:  J Mol Model       Date:  2018-10-29       Impact factor: 1.810

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