Literature DB >> 12737664

Estimating average cellular turnover from 5-bromo-2'-deoxyuridine (BrdU) measurements.

Rob J De Boer1, Hiroshi Mohri, David D Ho, Alan S Perelson.   

Abstract

Cellular turnover rates in the immune system can be determined by labelling dividing cells with 5-bromo-2'-deoxyuridine (BrdU) or deuterated glucose ((2)H-glucose). To estimate the turnover rate from such measurements one has to fit a particular mathematical model to the data. The biological assumptions underlying various models developed for this purpose are controversial. Here, we fit a series of different models to BrdU data on CD4(+) T cells from SIV(-) and SIV(+) rhesus macaques. We first show that the parameter estimates obtained using these models depend strongly on the details of the model. To resolve this lack of generality we introduce a new parameter for each model, the 'average turnover rate', defined as the cellular death rate averaged over all subpopulations in the model. We show that very different models yield similar estimates of the average turnover rate, i.e. ca. 1% day(-1) in uninfected monkeys and ca. 2% day(-1) in SIV-infected monkeys. Thus, we show that one can use BrdU data from a possibly heterogeneous population of cells to estimate the average turnover rate of that population in a robust manner.

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Year:  2003        PMID: 12737664      PMCID: PMC1691317          DOI: 10.1098/rspb.2002.2316

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  27 in total

Review 1.  Measurement of T-cell kinetics: recent methodologic advances.

Authors:  M K Hellerstein
Journal:  Immunol Today       Date:  1999-10

2.  Quantification of cell turnover kinetics using 5-bromo-2'-deoxyuridine.

Authors:  S Bonhoeffer; H Mohri; D Ho; A S Perelson
Journal:  J Immunol       Date:  2000-05-15       Impact factor: 5.422

3.  CD4+ T-cell depletion in HIV infection: are we closer to understanding the cause?

Authors:  Zvi Grossman; Martin Meier-Schellersheim; Ana E Sousa; Rui M M Victorino; William E Paul
Journal:  Nat Med       Date:  2002-04       Impact factor: 53.440

4.  Continued antigen stimulation is not required during CD4(+) T cell clonal expansion.

Authors:  William T Lee; Gregory Pasos; Luiza Cecchini; James N Mittler
Journal:  J Immunol       Date:  2002-02-15       Impact factor: 5.422

5.  Repeated antigen exposure is necessary for the differentiation, but not the initial proliferation, of naive CD4(+) T cells.

Authors:  Marc Bajénoff; Olivier Wurtz; Sylvie Guerder
Journal:  J Immunol       Date:  2002-02-15       Impact factor: 5.422

6.  Cutting edge: CD4 and CD8 T cells are intrinsically different in their proliferative responses.

Authors:  Kathryn E Foulds; Lauren A Zenewicz; Devon J Shedlock; Jiu Jiang; Amy E Troy; Hao Shen
Journal:  J Immunol       Date:  2002-02-15       Impact factor: 5.422

Review 7.  Lymphocyte kinetics: the interpretation of labelling data.

Authors:  Becca Asquith; Christophe Debacq; Derek C Macallan; Luc Willems; Charles R M Bangham
Journal:  Trends Immunol       Date:  2002-12       Impact factor: 16.687

8.  Modeling deuterated glucose labeling of T-lymphocytes.

Authors:  Ruy M Ribeiro; Hiroshi Mohri; David D Ho; Alan S Perelson
Journal:  Bull Math Biol       Date:  2002-03       Impact factor: 1.758

9.  Monoclonal antibody to 5-bromo- and 5-iododeoxyuridine: A new reagent for detection of DNA replication.

Authors:  H G Gratzner
Journal:  Science       Date:  1982-10-29       Impact factor: 47.728

10.  Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV.

Authors:  J A Kovacs; R A Lempicki; I A Sidorov; J W Adelsberger; B Herpin; J A Metcalf; I Sereti; M A Polis; R T Davey; J Tavel; J Falloon; R Stevens; L Lambert; R Dewar; D J Schwartzentruber; M R Anver; M W Baseler; H Masur; D S Dimitrov; H C Lane
Journal:  J Exp Med       Date:  2001-12-17       Impact factor: 14.307

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  17 in total

Review 1.  An introduction to lymphocyte and viral dynamics: the power and limitations of mathematical analysis.

Authors:  Becca Asquith; Charles R M Bangham
Journal:  Proc Biol Sci       Date:  2003-08-22       Impact factor: 5.349

2.  Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity.

Authors:  Rob J De Boer; Alan S Perelson; Ruy M Ribeiro
Journal:  J R Soc Interface       Date:  2012-04-18       Impact factor: 4.118

3.  Quantifying lymphocyte kinetics in vivo using carboxyfluorescein diacetate succinimidyl ester (CFSE).

Authors:  Becca Asquith; Christophe Debacq; Arnaud Florins; Nicolas Gillet; Teresa Sanchez-Alcaraz; Angelina Mosley; Luc Willems
Journal:  Proc Biol Sci       Date:  2006-05-07       Impact factor: 5.349

4.  Modelling the human immune system by combining bioinformatics and systems biology approaches.

Authors:  Nicolas Rapin; Can Kesmir; Sune Frankild; Morten Nielsen; Claus Lundegaard; Søren Brunak; Ole Lund
Journal:  J Biol Phys       Date:  2006-10-27       Impact factor: 1.365

Review 5.  Modeling T cell responses to antigenic challenge.

Authors:  Dominik Wodarz
Journal:  J Pharmacokinet Pharmacodyn       Date:  2014-10-01       Impact factor: 2.745

6.  A mechanistic model for bromodeoxyuridine dilution naturally explains labelling data of self-renewing T cell populations.

Authors:  Vitaly V Ganusov; Rob J De Boer
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

7.  Explicit kinetic heterogeneity: mathematical models for interpretation of deuterium labeling of heterogeneous cell populations.

Authors:  Vitaly V Ganusov; José A M Borghans; Rob J De Boer
Journal:  PLoS Comput Biol       Date:  2010-02-05       Impact factor: 4.475

8.  Quantifying T lymphocyte turnover.

Authors:  Rob J De Boer; Alan S Perelson
Journal:  J Theor Biol       Date:  2013-01-09       Impact factor: 2.691

9.  Dynamics of T- and B-lymphocyte turnover in a natural host of simian immunodeficiency virus.

Authors:  Amitinder Kaur; Michele Di Mascio; Amy Barabasz; Michael Rosenzweig; Harold M McClure; Alan S Perelson; Ruy M Ribeiro; R Paul Johnson
Journal:  J Virol       Date:  2007-11-21       Impact factor: 5.103

10.  Estimating dormant and active hematopoietic stem cell kinetics through extensive modeling of bromodeoxyuridine label-retaining cell dynamics.

Authors:  Richard C van der Wath; Anne Wilson; Elisa Laurenti; Andreas Trumpp; Pietro Liò
Journal:  PLoS One       Date:  2009-09-22       Impact factor: 3.240

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