Literature DB >> 12732297

Polarisation of prokaryotic chromosomes.

Jean R Lobry1, Jean-Michel Louarn.   

Abstract

In many prokaryotes, asymmetrical mutational or selective pressures have caused compositional skews between complementary strands of replication arms, especially sensitive in the distribution of guanine and cytosine. In Escherichia coli, most of the guanine/cytosine skew is caused by mutation rates differing on leading and lagging strands, but contribution of skewed functionally important guanine-rich motifs (Chi and Rag sites), which control chromosome repair or positioning, is noticeable. Interference between replication and gene expression plays a minor role. The situation may be different in other bacteria. Studies of chromosome processing and bacterial taxonomy might profit from consideration of chromosome polarisation.

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Mesh:

Year:  2003        PMID: 12732297     DOI: 10.1016/s1369-5274(03)00024-9

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  31 in total

1.  Asymmetric activation of Xer site-specific recombination by FtsK.

Authors:  Thomas H Massey; Laurent Aussel; François-Xavier Barre; David J Sherratt
Journal:  EMBO Rep       Date:  2004-04       Impact factor: 8.807

2.  Diversification of DnaA dependency for DNA replication in cyanobacterial evolution.

Authors:  Ryudo Ohbayashi; Satoru Watanabe; Shigeki Ehira; Yu Kanesaki; Taku Chibazakura; Hirofumi Yoshikawa
Journal:  ISME J       Date:  2015-10-30       Impact factor: 10.302

3.  Roles for replichores and macrodomains in segregation of the Escherichia coli chromosome.

Authors:  Christian Lesterlin; Romain Mercier; Frédéric Boccard; François-Xavier Barre; François Cornet
Journal:  EMBO Rep       Date:  2005-06       Impact factor: 8.807

4.  Selection for chromosome architecture in bacteria.

Authors:  Heather Hendrickson; Jeffrey G Lawrence
Journal:  J Mol Evol       Date:  2006-04-11       Impact factor: 2.395

5.  Fitness effects of replichore imbalance in Salmonella enterica.

Authors:  T David Matthews; Stanley Maloy
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

Review 6.  Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

Authors:  Sacha A F T van Hijum; Marnix H Medema; Oscar P Kuipers
Journal:  Microbiol Mol Biol Rev       Date:  2009-09       Impact factor: 11.056

Review 7.  Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.

Authors:  Marco Ventura; Carlos Canchaya; Andreas Tauch; Govind Chandra; Gerald F Fitzgerald; Keith F Chater; Douwe van Sinderen
Journal:  Microbiol Mol Biol Rev       Date:  2007-09       Impact factor: 11.056

8.  The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection.

Authors:  Kazuharu Arakawa; Masaru Tomita
Journal:  Evol Bioinform Online       Date:  2007-09-06       Impact factor: 1.625

Review 9.  Bacteria as computers making computers.

Authors:  Antoine Danchin
Journal:  FEMS Microbiol Rev       Date:  2008-11-07       Impact factor: 16.408

10.  Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index.

Authors:  Kazuharu Arakawa; Haruo Suzuki; Masaru Tomita
Journal:  BMC Genomics       Date:  2009-12-30       Impact factor: 3.969

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