Literature DB >> 12731075

Using a modified standard microscope to generate virtual slides.

David J Romer1, Kurtis H Yearsley, Leona W Ayers.   

Abstract

A standard microscope was reconfigured as a virtual slide generator by adding a Prior Scientific H101 robotic stage with H29 controller and 0.1 microm linear scales and a Hitachi HV-C20 3CCD camera. Media Cybernetics Image Pro Plus version 4 (IP4) software controlled stage movement in the X-, Y-, and Z-axis, whereas a Media Cybernetics Pro-Series Capture Kit captured images at 640 x 480 pixels. Stage calibration, scanning algorithms, storage requirements, and viewing modes were standardized. IP4 was used to montage the captured images into a large virtual slide image that was subsequently saved in TIF or JPEG format. Virtual slides were viewed at the workstation using the IP4 viewer as well as Adobe Photoshop and Kodak Imaging. MGI Zoom Server delivered the virtual slides to the Internet, and MicroBrightField's Neuroinformatica viewing software provided a browser-based virtual microscope interface together with labeling tools for annotating virtual slides. The images were served from a Windows 2000 platform with 2 GB RAM, 500 GB of disk storage, and a 1.0 GHz P4 processor. To conserve disk space on the image server, TIF files were converted to the FlashPix (FPX) file format using a compression ratio of 10:1. By using 4x, 10x, 20x, and 40x objectives, very large gigapixel images of tissue whole-mounts and tissue arrays with high quality and morphologic detail are now being generated for teaching, publication, research, and morphometric analysis. Technical details and a demonstration of our system can be found on the Web at http://virtualmicroscope.osu.edu. Copyright 2003 Wiley-Liss, Inc.

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Year:  2003        PMID: 12731075     DOI: 10.1002/ar.b.10017

Source DB:  PubMed          Journal:  Anat Rec B New Anat        ISSN: 1552-4906


  7 in total

1.  Histomorphometry of the ligaments using a generic-purpose image processing software, a new strategy for semi-automatized measurements.

Authors:  Rafael Ballesteros; Nuria Bonsfills; Marta Chacón; Javier García-Lázaro; Enrique Gómez-Barrena
Journal:  J Digit Imaging       Date:  2012-08       Impact factor: 4.056

2.  A digital atlas of breast histopathology: an application of web based virtual microscopy.

Authors:  M Lundin; J Lundin; H Helin; J Isola
Journal:  J Clin Pathol       Date:  2004-12       Impact factor: 3.411

Review 3.  Factors to keep in mind when introducing virtual microscopy.

Authors:  Katharina Glatz-Krieger; Udo Spornitz; Alain Spatz; Michael J Mihatsch; Dieter Glatz
Journal:  Virchows Arch       Date:  2005-11-22       Impact factor: 4.064

Review 4.  Pathology to enhance precision medicine in oncology: lessons from landscape ecology.

Authors:  Mark C Lloyd; Katarzyna A Rejniak; Joel S Brown; Robert A Gatenby; Emily S Minor; Marilyn M Bui
Journal:  Adv Anat Pathol       Date:  2015-07       Impact factor: 3.875

5.  The tissue micro-array data exchange specification: a web based experience browsing imported data.

Authors:  David G Nohle; Barbara A Hackman; Leona W Ayers
Journal:  BMC Med Inform Decis Mak       Date:  2005-08-08       Impact factor: 2.796

6.  Image Montaging for Creating a Virtual Pathology Slide: An Innovative and Economical Tool to Obtain a Whole Slide Image.

Authors:  Spoorthi Ravi Banavar; Prashanthi Chippagiri; Rohit Pandurangappa; Saileela Annavajjula; Premalatha Bidadi Rajashekaraiah
Journal:  Anal Cell Pathol (Amst)       Date:  2016-09-22       Impact factor: 2.916

7.  Real-time whole slide mosaicing for non-automated microscopes in histopathology analysis.

Authors:  Alessandro Gherardi; Alessandro Bevilacqua
Journal:  J Pathol Inform       Date:  2013-03-30
  7 in total

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