Literature DB >> 12727510

New approaches to the dynamic interpretation and prediction of NMR relaxation data from proteins.

Rafael Brüschweiler1.   

Abstract

NMR relaxation experiments of isotopically labeled proteins provide a wealth of information on reorientational global and local dynamics on nanosecond and subnanosecond timescales for folded and nonfolded proteins in solution. Recent methodological advances in the interpretation of relaxation data have led to a better understanding of the overall tumbling behavior, the separability of internal and overall motions, and the presence of correlated dynamics between different nuclear sites, as well as to new insights into the relationship between reorientational dynamics and primary and tertiary protein structure. Some of the new methods are particularly useful when dealing with nonfolded protein states.

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Year:  2003        PMID: 12727510     DOI: 10.1016/s0959-440x(03)00036-8

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  45 in total

Review 1.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

2.  High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins.

Authors:  John McCoy; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-04       Impact factor: 11.205

Review 3.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

4.  Analysis of side chain mobility among protein G B1 domain mutants with widely varying stabilities.

Authors:  Virginia A Goehlert; Ewa Krupinska; Lynne Regan; Martin J Stone
Journal:  Protein Sci       Date:  2004-11-10       Impact factor: 6.725

5.  Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.

Authors:  Surjit B Dixit; David Q Andrews; D L Beveridge
Journal:  Biophys J       Date:  2005-02-24       Impact factor: 4.033

6.  Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings.

Authors:  Guillaume Bouvignies; Pau Bernadó; Sebastian Meier; Kyuil Cho; Stephan Grzesiek; Rafael Brüschweiler; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

7.  Relating side-chain mobility in proteins to rotameric transitions: insights from molecular dynamics simulations and NMR.

Authors:  Hao Hu; Jan Hermans; Andrew L Lee
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

8.  Reorientational contact-weighted elastic network model for the prediction of protein dynamics: comparison with NMR relaxation.

Authors:  Dengming Ming; Rafael Brüschweiler
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

9.  Protein dynamics from NMR: the slowly relaxing local structure analysis compared with model-free analysis.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem A       Date:  2006-07-13       Impact factor: 2.781

Review 10.  Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution.

Authors:  Tatyana I Igumenova; Kendra King Frederick; A Joshua Wand
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

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