Literature DB >> 12724305

SCide: identification of stabilization centers in proteins.

Zsuzsanna Dosztányi1, Csaba Magyar, Gábor Tusnády, István Simon.   

Abstract

SUMMARY: SCide is a program to identify stabilization centers from known protein structures. These are residues involved in cooperative long-range contacts, which can be formed between various regions of a single polypeptide chain, or they can belong to different peptides or polypeptides in a complex. The server takes a PDB file as an input, and the result is presented in graphical or text format. AVAILABILITY: SCide is available on the web at http://www.enzim.hu/scide. The source code can be obtained from the authors on request.

Mesh：

Substances：

Year:  2003        PMID： 12724305     DOI： 10.1093/bioinformatics/btg110

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  31 in total

1.  Servers for sequence-structure relationship analysis and prediction.

Authors:  Zsuzsanna Dosztányi; Csaba Magyar; Gábor E Tusnády; Miklós Cserzo; András Fiser; István Simon
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Structural stability studies in adhesion molecules--role of cation-π interactions.

Authors:  K Sophiya; Anand Anbarasu
Journal:  Protoplasma       Date:  2010-10-27       Impact factor: 3.356

3.  Influence of C-H...O interactions on the structural stability of β-lactamases.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Phys       Date:  2013-06-25       Impact factor: 1.365

4.  Anion-π interactions in complexes of proteins and halogen-containing amino acids.

Authors:  Sunčica Z Borozan; Mario V Zlatović; Srđan Đ Stojanović
Journal:  J Biol Inorg Chem       Date:  2016-02-24       Impact factor: 3.358

5.  Contribution of anion-π interactions to the stability of Sm/LSm proteins.

Authors:  Luka M Breberina; Miloš K Milčić; Milan R Nikolić; Srđan Đ Stojanović
Journal:  J Biol Inorg Chem       Date:  2014-12-13       Impact factor: 3.358

6.  Predicting stable functional peptides from the intergenic space of E. coli.

Authors:  Vipin Thomas; Navya Raj; Deepthi Varughese; Naveen Kumar; Seema Sehrawat; Abhinav Grover; Shailja Singh; Pawan K Dhar; Achuthsankar S Nair
Journal:  Syst Synth Biol       Date:  2015-05-29

7.  Non-canonical H-bonds in β-lactamases: importance of C-H···π interactions.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Inorg Chem       Date:  2013-03-31       Impact factor: 3.358

8.  Influence of N- and/or C-terminal regions on activity, expression, characteristics and structure of lipase from Geobacillus sp. 95.

Authors:  Renata Gudiukaitė; Audrius Gegeckas; Darius Kazlauskas; Donaldas Citavicius
Journal:  Extremophiles       Date:  2013-11-28       Impact factor: 2.395

9.  Computational analysis of C-reactive protein for assessment of molecular dynamics and interaction properties.

Authors:  Chiranjib Chakraborty; Alok Agrawal
Journal:  Cell Biochem Biophys       Date:  2013-11       Impact factor: 2.194

10.  The critical role of N- and C-terminal contact in protein stability and folding of a family 10 xylanase under extreme conditions.

Authors:  Amit Bhardwaj; Sadhu Leelavathi; Sudeshna Mazumdar-Leighton; Amit Ghosh; Suryanarayanarao Ramakumar; Vanga S Reddy
Journal:  PLoS One       Date:  2010-06-28       Impact factor: 3.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.