Literature DB >> 12719218

Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data.

Necmettin Yildirim1, Michael C Mackey.   

Abstract

A mathematical model for the regulation of induction in the lac operon in Escherichia coli is presented. This model takes into account the dynamics of the permease facilitating the internalization of external lactose; internal lactose; beta-galactosidase, which is involved in the conversion of lactose to allolactose, glucose and galactose; the allolactose interactions with the lac repressor; and mRNA. The final model consists of five nonlinear differential delay equations with delays due to the transcription and translation process. We have paid particular attention to the estimation of the parameters in the model. We have tested our model against two sets of beta-galactosidase activity versus time data, as well as a set of data on beta-galactosidase activity during periodic phosphate feeding. In all three cases we find excellent agreement between the data and the model predictions. Analytical and numerical studies also indicate that for physiologically realistic values of the external lactose and the bacterial growth rate, a regime exists where there may be bistable steady-state behavior, and that this corresponds to a cusp bifurcation in the model dynamics.

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Year:  2003        PMID: 12719218      PMCID: PMC1302849          DOI: 10.1016/S0006-3495(03)70013-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

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Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

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  51 in total

1.  A nonlinear discrete dynamical model for transcriptional regulation: construction and properties.

Authors:  John Goutsias; Seungchan Kim
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

2.  Influence of catabolite repression and inducer exclusion on the bistable behavior of the lac operon.

Authors:  Moisés Santillán; Michael C Mackey
Journal:  Biophys J       Date:  2004-03       Impact factor: 4.033

3.  Optimizing genetic circuits by global sensitivity analysis.

Authors:  Xiao-Jiang Feng; Sara Hooshangi; David Chen; Genyuan Li; Ron Weiss; Herschel Rabitz
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

4.  Delay-induced stochastic oscillations in gene regulation.

Authors:  Dmitri Bratsun; Dmitri Volfson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

5.  A model for intracellular trafficking of adenoviral vectors.

Authors:  Anh-Tuan Dinh; Theo Theofanous; Samir Mitragotri
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

6.  Topology and static response of interaction networks in molecular biology.

Authors:  Ovidiu Radulescu; Sandrine Lagarrigue; Anne Siegel; Philippe Veber; Michel Le Borgne
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

Review 7.  How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria.

Authors:  Josef Deutscher; Christof Francke; Pieter W Postma
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

8.  Mathematical description of gene regulatory units.

Authors:  Reiko J Tanaka; Hiroyuki Okano; Hidenori Kimura
Journal:  Biophys J       Date:  2006-05-19       Impact factor: 4.033

9.  Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

Authors:  Alexander Y Mitrophanov; Gordon Churchward; Mark Borodovsky
Journal:  J Theor Biol       Date:  2006-11-21       Impact factor: 2.691

10.  Fixed points in discrete models for regulatory genetic networks.

Authors:  Dorothy Bollman; Omar Colón-Reyes; Edusmildo Orozco
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007
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