Literature DB >> 12715830

A review of bioinformatics education in the UK.

Damian Counsell1.   

Abstract

If the completion of the first draft of the human genome represents the coming of age of bioinformatics, then the emergence of bioinformatics as a university degree subject represents its establishment. In this paper bioinformatics as a subject for formal study is discussed, rather than as a subject for research, and a selection of the taught, mainly graduate, courses currently available in the UK are reviewed. Throughout, the author tries to draw parallels between the integration of bioinformatics into biomedical research and teaching today, and that of molecular biology, two decades ago. Others have made this analogy between these two relatively young disciplines. Although research sources are referenced, the author makes no pretence of objectivity. This article contains his opinions, and those of a number of current bioinformatics course organisers whose comments on the subject were solicited in advance specifically for this paper. The course organisers kindly advised how they planned their curricula, and described the special strengths of their programmes. Comments from present and former students of several bioinformatics degree programmes were also solicited. Except where individuals are directly quoted, any opinions expressed herein should be considered the author's. Compared with its sister piece [Marion Zatz, in previous issue of Briefings in Bioinformatics pp. 353], this paper is less about funding policy--which, in the UK, has lately (if belatedly) been more generous towards bioinformatics teaching--than it is about practice and content; the requirements of the bioinformatics research communities, the corresponding emphases of bioinformatics courses, and the general market for holders of bioinformatics degrees. Individual courses are cited throughout as examples, but the final section contains a full annotated listing with URL addresses. Based on the author's own experience of practising and teaching bioinformatics, he describes the skills he believes will be most useful to bioinformaticians in the near future and suggests ways to prepare students of bioinformatics for a fall in demand for those abilities.

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Year:  2003        PMID: 12715830     DOI: 10.1093/bib/4.1.7

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  15 in total

1.  A summer program designed to educate college students for careers in bioinformatics.

Authors:  Beverly Krilowicz; Wendie Johnston; Sandra B Sharp; Nancy Warter-Perez; Jamil Momand
Journal:  CBE Life Sci Educ       Date:  2007       Impact factor: 3.325

2.  Bioinformatics in high school biology curricula: a study of state science standards.

Authors:  Stephen H Wefer; Keith Sheppard
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

3.  Building the next generation of quantitative biologists.

Authors:  Kristine A Pattin; Anna C Greene; Russ B Altman; Lawrence E Hunter; David A Ross; James A Foster; Jason H Moore
Journal:  Pac Symp Biocomput       Date:  2014

4.  Bioinformatics in Africa: The Rise of Ghana?

Authors:  Thomas K Karikari
Journal:  PLoS Comput Biol       Date:  2015-09-17       Impact factor: 4.475

5.  Letter to the editor.

Authors:  Thomas K Karikari
Journal:  J Microbiol Biol Educ       Date:  2015-05-01

Review 6.  A survey of scholarly literature describing the field of bioinformatics education and bioinformatics educational research.

Authors:  Alejandra J Magana; Manaz Taleyarkhan; Daniela Rivera Alvarado; Michael Kane; John Springer; Kari Clase
Journal:  CBE Life Sci Educ       Date:  2014       Impact factor: 3.325

7.  Bioinformatics goes to school--new avenues for teaching contemporary biology.

Authors:  Louisa Wood; Philipp Gebhardt
Journal:  PLoS Comput Biol       Date:  2013-06-13       Impact factor: 4.475

Review 8.  Computational biology in Cuba: an opportunity to promote science in a developing country.

Authors:  Tirso Pons; Luis A Montero; Juan P Febles
Journal:  PLoS Comput Biol       Date:  2007-11       Impact factor: 4.475

9.  Bioinformatics education--perspectives and challenges out of Africa.

Authors:  Özlem Tastan Bishop; Ezekiel F Adebiyi; Ahmed M Alzohairy; Dean Everett; Kais Ghedira; Amel Ghouila; Judit Kumuthini; Nicola J Mulder; Sumir Panji; Hugh-G Patterton
Journal:  Brief Bioinform       Date:  2014-07-02       Impact factor: 11.622

10.  Navigating the changing learning landscape: perspective from bioinformatics.ca.

Authors:  Michelle D Brazas; B F Francis Ouellette
Journal:  Brief Bioinform       Date:  2013-03-20       Impact factor: 11.622

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