Literature DB >> 12710469

Turkey microsatellite loci from an embryonic cDNA library.

P K Dranchak1, L D Chaves, J A Rowe, K M Reed.   

Abstract

Expressed sequence tags (EST) containing microsatellites have been used in the development of both genetic linkage maps and syntenic maps for various species and, thus, offer the advantage of being a convenient tool in comparative mapping studies. A turkey embryonic cDNA library was constructed and screened with (CA/TG)15, (GA/CT)15, (AGG)10, and (AAAC)7 probes for the development of polymorphic microsatellite markers. Sequences of 128 cDNA revealed 42 new loci containing microsatellites. BLAST nucleotide analysis demonstrated significant homology to known mammalian or avian coding regions for 15 of the turkey EST, five of which matched chicken transcripts. The remaining 27 EST represented novel sequences. Of the 42 new loci, 31 were polymorphic when tested on commercial turkey lines, including the founding individuals of a new resource population developed for genetic linkage mapping. Comparative mapping of these markers will provide new information toward the evolutionary divergence of turkey and chicken as well as other species.

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Year:  2003        PMID: 12710469     DOI: 10.1093/ps/82.4.526

Source DB:  PubMed          Journal:  Poult Sci        ISSN: 0032-5791            Impact factor:   3.352


  4 in total

1.  Mining of simple sequence repeats in the Genome of Gentianaceae.

Authors:  R Sathishkumar; P T V Lakshmi; A Annamalai; V Arunachalam
Journal:  Pharmacognosy Res       Date:  2011-01

2.  Comparative mapping of expressed sequence tags containing microsatellites in rainbow trout (Oncorhynchus mykiss).

Authors:  Caird E Rexroad; Maria F Rodriguez; Issa Coulibaly; Karim Gharbi; Roy G Danzmann; Jenefer Dekoning; Ruth Phillips; Yniv Palti
Journal:  BMC Genomics       Date:  2005-04-18       Impact factor: 3.969

3.  Enhanced cross-species utility of conserved microsatellite markers in shorebirds.

Authors:  Clemens Küpper; Terry Burke; Tamás Székely; Deborah A Dawson
Journal:  BMC Genomics       Date:  2008-10-24       Impact factor: 3.969

4.  Gallus GBrowse: a unified genomic database for the chicken.

Authors:  Carl J Schmidt; Michael Romanov; Oliver Ryder; Vincent Magrini; Matthew Hickenbotham; Jarret Glasscock; Sean McGrath; Elaine Mardis; Lincoln D Stein
Journal:  Nucleic Acids Res       Date:  2007-10-11       Impact factor: 16.971

  4 in total

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