Literature DB >> 12707783

Local enrichment with homopolymeric (dA/dT) DNA in genomes of some lower dipterans and Drosophila melanogaster.

Ann Jacob Stocker1, Eduardo Gorab.   

Abstract

An investigation into the chromosomal localization of homopolymeric dA/dT was carried out with species of the genera Rhynchosciara, Chironomus, Drosophila and several other taxa. In situ hybridisation probing mitotic and polytene chromosomes with RNA homopolymers was performed, followed by immunological detection of the DNA/RNA hybrid. Use of this method allowed us to assess specific regions of some dipteran genomes, where the signal was generally, but not always, located in heterochromatic regions. Human and Drosophila chromosome regions known to contain dA/dT runs of up to 153 bp were devoid of consistent labelling. The stability of the rA/dT hybrid formed in situ was in agreement with the T(m) for long rA/dT hybrid complexes, suggesting that the method used in this work is able to identify unusually long homopolymeric dA/dT tracts.

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Year:  2003        PMID: 12707783     DOI: 10.1007/s00412-003-0230-z

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  13 in total

1.  DNA distortion as a factor in nucleosome positioning.

Authors:  D J Fitzgerald; J N Anderson
Journal:  J Mol Biol       Date:  1999-10-29       Impact factor: 5.469

2.  Complex formation between poly-r (U) and various chromosomal loci in Rhynchosciara.

Authors:  K W Jones; J O Bishop; A Brito-da-Cunha
Journal:  Chromosoma       Date:  1973       Impact factor: 4.316

3.  Immunofluorescent characterization of DNA . RNA hybrids on polytene chromosomes of Trichosia pubescens (Diptera, sciaridae).

Authors:  W Büsen; J M Amabis; O Leoncini; B D Stollar; F J Lara
Journal:  Chromosoma       Date:  1982       Impact factor: 4.316

4.  Distinct frequency-distributions of homopolymeric DNA tracts in different genomes.

Authors:  K J Dechering; K Cuelenaere; R N Konings; J A Leunissen
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

5.  Clustered and interspersed repetitive DNA sequence family of Chironomus. The nucleotide sequence of the Cla-elements and of various flanking sequences.

Authors:  E R Schmidt
Journal:  J Mol Biol       Date:  1984-09-05       Impact factor: 5.469

6.  The contribution of slippage-like processes to genome evolution.

Authors:  J M Hancock
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

7.  A molecular cytogenetic comparison between Rhynchosciara americana and Rhynchosciara hollaenderi (Diptera: Sciaridae).

Authors:  A J Stocker; E Gorab; J M Amabis; F J Lara
Journal:  Genome       Date:  1993-10       Impact factor: 2.166

8.  Comparison of poly(A).poly(dT) and poly(I).poly(dC) as immunogens for the induction of antibodies to RNA-DNA hybrids.

Authors:  Y Kitagawa; B D Stollar
Journal:  Mol Immunol       Date:  1982-03       Impact factor: 4.407

9.  Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster.

Authors:  A R Lohe; A J Hilliker; P A Roberts
Journal:  Genetics       Date:  1993-08       Impact factor: 4.562

10.  Physical and chemical characterization of two- and three-stranded adenine-thymine and adenine-uracil homopolymer complexes.

Authors:  M Riley; B Maling
Journal:  J Mol Biol       Date:  1966-09       Impact factor: 5.469

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  9 in total

1.  Cloning and characterisation of a novel chromosome end repeat enriched with homopolymeric (dA)/(dT) DNA in Rhynchosciara americana (Diptera: Sciaridae).

Authors:  Thiago Fernandes; Christiane Rodriguez Gutierrez Madalena; Eduardo Gorab
Journal:  Chromosome Res       Date:  2012-06-23       Impact factor: 5.239

2.  Unusually short tandem repeats appear to reach chromosome ends of Rhynchosciara americana (Diptera: Sciaridae).

Authors:  Christiane Rodriguez Gutierrez Madalena; José Mariano Amabis; Eduardo Gorab
Journal:  Chromosoma       Date:  2010-07-08       Impact factor: 4.316

3.  Reverse transcriptase-related proteins in telomeres and in certain chromosomal loci of Rhynchosciara (Diptera: Sciaridae).

Authors:  Eduardo Gorab
Journal:  Chromosoma       Date:  2003-03-07       Impact factor: 4.316

4.  Ribosomal RNA gene insertions in the R2 site of Rhynchosciara (Diptera: Sciaridae).

Authors:  Christiane Rodriguez Gutierrez Madalena; Luiz Paulo Moura Andrioli; Eduardo Gorab
Journal:  Chromosome Res       Date:  2008-11-30       Impact factor: 5.239

5.  Potential sites of triple-helical nucleic acid formation in chromosomes of Rhynchosciara (Diptera: Sciaridae) and Drosophila melanogaster.

Authors:  Eduardo Gorab; José Mariano Amabis; Ann Jacob Stocker; Laura Drummond; Bernard David Stollar
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

6.  The localization of ribosomal DNA in Sciaridae (Diptera: Nematocera) reassessed.

Authors:  Christiane Rodriguez Gutierrez Madalena; José Mariano Amabis; Ann Jacob Stocker; Eduardo Gorab
Journal:  Chromosome Res       Date:  2007-01-21       Impact factor: 5.239

7.  Thiazole Orange as an Alternative to Antibody Binding for Detecting Triple-helical DNA in Heterochromatin of Drosophila and Rhynchosciara.

Authors:  Eduardo Gorab; Peter Lees Pearson
Journal:  J Histochem Cytochem       Date:  2017-12-21       Impact factor: 2.479

8.  Chromosome End Diversification in Sciarid Flies.

Authors:  Eduardo Gorab
Journal:  Cells       Date:  2020-11-05       Impact factor: 6.600

9.  Dramatic nucleolar dispersion in the salivary gland of Schwenkfeldina sp. (Diptera: Sciaridae).

Authors:  José Mariano Amabis; Eduardo Gorab
Journal:  Sci Rep       Date:  2021-04-16       Impact factor: 4.379

  9 in total

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