Literature DB >> 12704239

Dispersal of NK homeobox gene clusters in amphioxus and humans.

Graham N Luke1, L Filipe C Castro, Kirsten McLay, Christine Bird, Alan Coulson, Peter W H Holland.   

Abstract

The Drosophila melanogaster genome has six physically clustered NK-related homeobox genes in just 180 kb. Here we show that the NK homeobox gene cluster was an ancient feature of bilaterian animal genomes, but has been secondarily split in chordate ancestry. The NK homeobox gene clusters of amphioxus and vertebrates are each split and dispersed at two equivalent intergenic positions. From the ancestral NK gene cluster, only the Tlx-Lbx and NK3-NK4 linkages have been retained in chordates. This evolutionary pattern is in marked contrast to the Hox and ParaHox gene clusters, which are compact in amphioxus and vertebrates, but have been disrupted in Drosophila.

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Year:  2003        PMID: 12704239      PMCID: PMC154338          DOI: 10.1073/pnas.0836141100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

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Authors:  B Galliot; C de Vargas; D Miller
Journal:  Dev Genes Evol       Date:  1999-03       Impact factor: 0.900

2.  Evolutionary origins of vertebrate appendicular muscle.

Authors:  C Neyt; K Jagla; C Thisse; B Thisse; L Haines; P D Currie
Journal:  Nature       Date:  2000-11-02       Impact factor: 49.962

3.  Evidence for 14 homeobox gene clusters in human genome ancestry.

Authors:  S L Pollard; P W Holland
Journal:  Curr Biol       Date:  2000-09-07       Impact factor: 10.834

Review 4.  A cluster of Drosophila homeobox genes involved in mesoderm differentiation programs.

Authors:  K Jagla; M Bellard; M Frasch
Journal:  Bioessays       Date:  2001-02       Impact factor: 4.345

5.  An amphioxus snail gene: expression in paraxial mesoderm and neural plate suggests a conserved role in patterning the chordate embryo.

Authors:  J A Langeland; J M Tomsa; W R Jackman; C B Kimmel
Journal:  Dev Genes Evol       Date:  1998-12       Impact factor: 0.900

6.  The ParaHox gene cluster is an evolutionary sister of the Hox gene cluster.

Authors:  N M Brooke; J Garcia-Fernàndez; P W Holland
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

7.  Splits in fruitfly Hox gene complexes.

Authors:  G Von Allmen; I Hogga; A Spierer; F Karch; W Bender; H Gyurkovics; E Lewis
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

8.  Archetypal organization of the amphioxus Hox gene cluster.

Authors:  J Garcia-Fernández; P W Holland
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

9.  Molecular phylogenetics and the origins of placental mammals.

Authors:  W J Murphy; E Eizirik; W E Johnson; Y P Zhang; O A Ryder; S J O'Brien
Journal:  Nature       Date:  2001-02-01       Impact factor: 49.962

10.  ladybird, a tandem of homeobox genes that maintain late wingless expression in terminal and dorsal epidermis of the Drosophila embryo.

Authors:  K Jagla; T Jagla; P Heitzler; G Dretzen; F Bellard; M Bellard
Journal:  Development       Date:  1997-01       Impact factor: 6.868

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  31 in total

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Authors:  N J Kenny; K W Chan; W Nong; Z Qu; I Maeso; H Y Yip; T F Chan; H S Kwan; P W H Holland; K H Chu; J H L Hui
Journal:  Heredity (Edinb)       Date:  2015-09-30       Impact factor: 3.821

2.  Patterns of conservation and change in honey bee developmental genes.

Authors:  Peter K Dearden; Megan J Wilson; Lisha Sablan; Peter W Osborne; Melanie Havler; Euan McNaughton; Kiyoshi Kimura; Natalia V Milshina; Martin Hasselmann; Tanja Gempe; Morten Schioett; Susan J Brown; Christine G Elsik; Peter W H Holland; Tatsuhiko Kadowaki; Martin Beye
Journal:  Genome Res       Date:  2006-10-25       Impact factor: 9.043

3.  The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Authors:  Linda Z Holland; Ricard Albalat; Kaoru Azumi; Elia Benito-Gutiérrez; Matthew J Blow; Marianne Bronner-Fraser; Frederic Brunet; Thomas Butts; Simona Candiani; Larry J Dishaw; David E K Ferrier; Jordi Garcia-Fernàndez; Jeremy J Gibson-Brown; Carmela Gissi; Adam Godzik; Finn Hallböök; Dan Hirose; Kazuyoshi Hosomichi; Tetsuro Ikuta; Hidetoshi Inoko; Masanori Kasahara; Jun Kasamatsu; Takeshi Kawashima; Ayuko Kimura; Masaaki Kobayashi; Zbynek Kozmik; Kaoru Kubokawa; Vincent Laudet; Gary W Litman; Alice C McHardy; Daniel Meulemans; Masaru Nonaka; Robert P Olinski; Zeev Pancer; Len A Pennacchio; Mario Pestarino; Jonathan P Rast; Isidore Rigoutsos; Marc Robinson-Rechavi; Graeme Roch; Hidetoshi Saiga; Yasunori Sasakura; Masanobu Satake; Yutaka Satou; Michael Schubert; Nancy Sherwood; Takashi Shiina; Naohito Takatori; Javier Tello; Pavel Vopalensky; Shuichi Wada; Anlong Xu; Yuzhen Ye; Keita Yoshida; Fumiko Yoshizaki; Jr-Kai Yu; Qing Zhang; Christian M Zmasek; Pieter J de Jong; Kazutoyo Osoegawa; Nicholas H Putnam; Daniel S Rokhsar; Noriyuki Satoh; Peter W H Holland
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

Review 4.  Secreted and transmembrane wnt inhibitors and activators.

Authors:  Cristina-Maria Cruciat; Christof Niehrs
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

5.  Conservation of gene linkage in dispersed vertebrate NK homeobox clusters.

Authors:  Karl R Wotton; Frida K Weierud; José L Juárez-Morales; Lúcia E Alvares; Susanne Dietrich; Katharine E Lewis
Journal:  Dev Genes Evol       Date:  2009-10       Impact factor: 0.900

Review 6.  Hox genes and their candidate downstream targets in the developing central nervous system.

Authors:  Z N Akin; A J Nazarali
Journal:  Cell Mol Neurobiol       Date:  2005-06       Impact factor: 5.046

7.  Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum.

Authors:  Jessica Doran Cande; Vivek S Chopra; Michael Levine
Journal:  Development       Date:  2009-09       Impact factor: 6.868

Review 8.  WNT-β-catenin signalling - a versatile player in kidney injury and repair.

Authors:  Stefan J Schunk; Jürgen Floege; Danilo Fliser; Thimoteus Speer
Journal:  Nat Rev Nephrol       Date:  2020-09-28       Impact factor: 28.314

9.  Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae.

Authors:  Naohito Takatori; Thomas Butts; Simona Candiani; Mario Pestarino; David E K Ferrier; Hidetoshi Saiga; Peter W H Holland
Journal:  Dev Genes Evol       Date:  2008-09-17       Impact factor: 0.900

10.  The genetic factors of bilaterian evolution.

Authors:  Peter Heger; Wen Zheng; Anna Rottmann; Kristen A Panfilio; Thomas Wiehe
Journal:  Elife       Date:  2020-07-16       Impact factor: 8.140

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