Literature DB >> 12702794

The 2002 Olympic Games of protein structure prediction.

Daniel Fischer1, Leszek Rychlewski.   

Abstract

The summer of every even year is considered by the protein structure prediction community as the Olympic Games season, because in addition to a number of continuous benchmarking experiments such as LiveBench, much effort is invested in the blind prediction experiments CASP and CAFASP. Here we report the major advances registered in the field since the last Games of 2000, as measured by the recently completed LiveBench-4 experiment. These results provide a timely measure of the capabilities of current methods and of their expected performance in the upcoming CASP-5 and CAFASP-3 experiments. We also describe the initiation of the two new, community-wide experiments, PDB-CAFASP and MR-CAFASP. These new experiments extend the scope of previous efforts and may have important implications for structural genomics.

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Year:  2003        PMID: 12702794     DOI: 10.1093/proeng/gzg022

Source DB:  PubMed          Journal:  Protein Eng        ISSN: 0269-2139


  6 in total

1.  LiveBench-8: the large-scale, continuous assessment of automated protein structure prediction.

Authors:  Leszek Rychlewski; Daniel Fischer
Journal:  Protein Sci       Date:  2005-01       Impact factor: 6.725

2.  Predicted hexameric structure of the Agrobacterium VirB4 C terminus suggests VirB4 acts as a docking site during type IV secretion.

Authors:  Rebecca Middleton; Kimmen Sjölander; Nandini Krishnamurthy; Jonathan Foley; Patricia Zambryski
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-24       Impact factor: 11.205

3.  All are not equal: a benchmark of different homology modeling programs.

Authors:  Björn Wallner; Arne Elofsson
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

4.  The design and implementation of the immune epitope database and analysis resource.

Authors:  Bjoern Peters; John Sidney; Phil Bourne; Huynh-Hoa Bui; Soeren Buus; Grace Doh; Ward Fleri; Mitch Kronenberg; Ralph Kubo; Ole Lund; David Nemazee; Julia V Ponomarenko; Muthu Sathiamurthy; Stephen P Schoenberger; Scott Stewart; Pamela Surko; Scott Way; Steve Wilson; Alessandro Sette
Journal:  Immunogenetics       Date:  2005-05-14       Impact factor: 2.846

5.  Automated functional classification of experimental and predicted protein structures.

Authors:  Kai Wang; Ram Samudrala
Journal:  BMC Bioinformatics       Date:  2006-06-02       Impact factor: 3.169

6.  Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.

Authors:  Marcin Grynberg; Lukasz Jaroszewski; Adam Godzik
Journal:  BMC Bioinformatics       Date:  2003-10-10       Impact factor: 3.169

  6 in total

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