Literature DB >> 12695663

Scores of RINGS but no PHDs in ubiquitin signaling.

L Aravind1, L M Iyer, E V Koonin.   

Abstract

Recently, it has been reported that PHD fingers of MEKK1 kinase and a family of viral and cellular membrane proteins have E3 ubiquitin ligase activity. Here we describe unique sequence and structural signatures that distinguish PHD fingers from RING fingers, which function primarily as E3 ubiquitin ligases, and demonstrate that the Zn-binding modules of the above proteins are distinct versions of the RING domain rather than PHD fingers. Thus, currently available data reveal extreme versatility of RINGs and their derivatives that function as E3 ubiquitin ligases but provide no evidence of this activity among PHD fingers whose principal function appears to involve specific protein-protein and possibly protein-DNA interactions in chromatin.

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Year:  2003        PMID: 12695663     DOI: 10.4161/cc.2.2.335

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  29 in total

1.  Downregulation of major histocompatibility complex class I by human ubiquitin ligases related to viral immune evasion proteins.

Authors:  Eric Bartee; Mandana Mansouri; Bianca T Hovey Nerenberg; Kristine Gouveia; Klaus Früh
Journal:  J Virol       Date:  2004-02       Impact factor: 5.103

Review 2.  The ING family tumor suppressors: from structure to function.

Authors:  Almass-Houd Aguissa-Touré; Ronald P C Wong; Gang Li
Journal:  Cell Mol Life Sci       Date:  2010-08-29       Impact factor: 9.261

3.  MEKK1 mediates the ubiquitination and degradation of c-Jun in response to osmotic stress.

Authors:  Yan Xia; Ji Wang; Shuichan Xu; Gary L Johnson; Tony Hunter; Zhimin Lu
Journal:  Mol Cell Biol       Date:  2006-11-13       Impact factor: 4.272

4.  Rotavirus NSP1 mediates degradation of interferon regulatory factors through targeting of the dimerization domain.

Authors:  Michelle M Arnold; Mario Barro; John T Patton
Journal:  J Virol       Date:  2013-07-03       Impact factor: 5.103

Review 5.  Concise machinery for monitoring ubiquitination activities using novel artificial RING fingers.

Authors:  Kazuhide Miyamoto; Kazuki Saito
Journal:  Protein Sci       Date:  2018-05-03       Impact factor: 6.725

6.  Evidence for parallel evolution of a gene involved in the regulation of spermatogenesis.

Authors:  Xin Rui Wang; Li Bin Ling; Hsiao Han Huang; Jau Jyun Lin; Sebastian D Fugmann; Shu Yuan Yang
Journal:  Proc Biol Sci       Date:  2017-05-31       Impact factor: 5.349

7.  Nse1 RING-like domain supports functions of the Smc5-Smc6 holocomplex in genome stability.

Authors:  Stephanie Pebernard; J Jefferson P Perry; John A Tainer; Michael N Boddy
Journal:  Mol Biol Cell       Date:  2008-07-30       Impact factor: 4.138

8.  Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation.

Authors:  A Maxwell Burroughs; Marcie Jaffee; Lakshminarayan M Iyer; L Aravind
Journal:  J Struct Biol       Date:  2008-01-01       Impact factor: 2.867

9.  The NEF4 complex regulates Rad4 levels and utilizes Snf2/Swi2-related ATPase activity for nucleotide excision repair.

Authors:  Kerrington L Ramsey; Joshua J Smith; Arindam Dasgupta; Nazif Maqani; Patrick Grant; David T Auble
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

10.  Soybean GmPHD-type transcription regulators improve stress tolerance in transgenic Arabidopsis plants.

Authors:  Wei Wei; Jian Huang; Yu-Jun Hao; Hong-Feng Zou; Hui-Wen Wang; Jing-Yun Zhao; Xue-Yi Liu; Wan-Ke Zhang; Biao Ma; Jin-Song Zhang; Shou-Yi Chen
Journal:  PLoS One       Date:  2009-09-30       Impact factor: 3.240

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