Literature DB >> 12691998

GoFish finds genes with combinations of Gene Ontology attributes.

Gabriel F Berriz1, James V White, Oliver D King, Frederick P Roth.   

Abstract

SUMMARY: GoFish is a Java application that allows users to search for gene products with particular gene ontology (GO) attributes, or combinations of attributes. GoFish ranks gene products by the degree to which they satisfy a Boolean query. Four organisms are currently supported: Saccaromyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, and M.musculus.

Entities:  

Mesh：

Year:  2003        PMID： 12691998     DOI： 10.1093/bioinformatics/btg088

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  GOblet: a platform for Gene Ontology annotation of anonymous sequence data.

Authors:  Detlef Groth; Hans Lehrach; Steffen Hennig
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  User centered and ontology based information retrieval system for life sciences.

Authors:  Mohameth-François Sy; Sylvie Ranwez; Jacky Montmain; Armelle Regnault; Michel Crampes; Vincent Ranwez
Journal:  BMC Bioinformatics       Date:  2012-01-25       Impact factor: 3.169

3.  Mining Gene Ontology Data with AGENDA.

Authors:  Guvanch Ovezmyradov; Qianhao Lu; Martin C Göpfert
Journal:  Bioinform Biol Insights       Date:  2012-04-18

4.  GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.

Authors:  Rachel S G Sealfon; Matthew A Hibbs; Curtis Huttenhower; Chad L Myers; Olga G Troyanskaya
Journal:  BMC Bioinformatics       Date:  2006-10-10       Impact factor: 3.169

5.  GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.

Authors:  Paulo C Carvalho; Juliana Sg Fischer; Emily I Chen; Gilberto B Domont; Maria Gc Carvalho; Wim M Degrave; John R Yates; Valmir C Barbosa
Journal:  Proteome Sci       Date:  2009-02-24       Impact factor: 2.480

6.  GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.

Authors:  Qingwei Xu; Yixiang Shi; Qiang Lu; Guoqing Zhang; Qingming Luo; Yixue Li
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169
  6 in total

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