Literature DB >> 12691990

Client-server environment for high-performance gene expression data analysis.

Alexander Sturn1, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, Zlatko Trajanoski.   

Abstract

SUMMARY: We have developed a platform independent, flexible and scalable Java environment for high-performance large-scale gene expression data analysis, which integrates various computational intensive hierarchical and non-hierarchical clustering algorithms. The environment includes a powerful client for data preparation and results visualization, an application server for computation and an additional administration tool. The package is available free of charge for academic and non-profit institutions.

Mesh:

Year:  2003        PMID: 12691990     DOI: 10.1093/bioinformatics/btg074

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  5 in total

1.  Fusarium graminearum-induced changes in gene expression between Fusarium head blight-resistant and susceptible wheat cultivars.

Authors:  Amy Bernardo; Guihua Bai; Peiguo Guo; Kai Xiao; Arron C Guenzi; Patricia Ayoubi
Journal:  Funct Integr Genomics       Date:  2006-04-25       Impact factor: 3.410

2.  Alteration of gene expression during progression of hypertension-induced cardiac dysfunction in rats.

Authors:  Tomoyoshi Koyanagi; Lily Y Wong; Koichi Inagaki; Olga V Petrauskene; Daria Mochly-Rosen
Journal:  Am J Physiol Heart Circ Physiol       Date:  2008-05-16       Impact factor: 4.733

3.  PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.

Authors:  Bernhard Mlecnik; Marcel Scheideler; Hubert Hackl; Jürgen Hartler; Fatima Sanchez-Cabo; Zlatko Trajanoski
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

4.  CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.

Authors:  Johannes Rainer; Fatima Sanchez-Cabo; Gernot Stocker; Alexander Sturn; Zlatko Trajanoski
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

5.  Effects of GSK3 inhibitors on in vitro expansion and differentiation of human adipose-derived stem cells into adipocytes.

Authors:  Laure-Emmanuelle Zaragosi; Brigitte Wdziekonski; Coralie Fontaine; Phi Villageois; Pascal Peraldi; Christian Dani
Journal:  BMC Cell Biol       Date:  2008-02-13       Impact factor: 4.241

  5 in total

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