Literature DB >> 12690188

Realizing the potential of the genome revolution: the genomes to life program.

Marvin E Frazier1, Gary M Johnson, David G Thomassen, Carl E Oliver, Aristides Patrinos.   

Abstract

The systems biology revolution is proceeding along multiple pathways as different science agencies and the private sector have adopted strategies suited to their particular needs and cultures. To meet this challenge, the U.S. Department of Energy has developed the Genomes to Life (GTL) program. A central focus of GTL is environmental microbial biology as a way to approach global environmental problems, and its key goal is to achieve, over the next 10 to 20 years, a basic understanding of thousands of microbes and microbial systems in their native environments. This focus demands that we address huge gaps in knowledge, technology, computing, data storage and manipulation, and systems-level integration.

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Year:  2003        PMID: 12690188     DOI: 10.1126/science.1084566

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  11 in total

Review 1.  The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.

Authors:  Adam M Feist; Bernhard Ø Palsson
Journal:  Nat Biotechnol       Date:  2008-06       Impact factor: 54.908

Review 2.  The EcoCyc Database.

Authors:  Peter D Karp; Wai Kit Ong; Suzanne Paley; Richard Billington; Ron Caspi; Carol Fulcher; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Peter E Midford; Pallavi Subhraveti; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martinez; Alberto Santos-Zavaleta; Amanda Mackie; Julio Collado-Vides; Ingrid M Keseler; Ian Paulsen
Journal:  EcoSal Plus       Date:  2018-11

3.  Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Authors:  Eugene Kolker; Alex F Picone; Michael Y Galperin; Margaret F Romine; Roger Higdon; Kira S Makarova; Natali Kolker; Gordon A Anderson; Xiaoyun Qiu; Kenneth J Auberry; Gyorgy Babnigg; Alex S Beliaev; Paul Edlefsen; Dwayne A Elias; Yuri A Gorby; Ted Holzman; Joel A Klappenbach; Konstantinos T Konstantinidis; Miriam L Land; Mary S Lipton; Lee-Ann McCue; Matthew Monroe; Ljiljana Pasa-Tolic; Grigoriy Pinchuk; Samuel Purvine; Margrethe H Serres; Sasha Tsapin; Brian A Zakrajsek; Wenhong Zhu; Jizhong Zhou; Frank W Larimer; Charles E Lawrence; Monica Riley; Frank R Collart; John R Yates; Richard D Smith; Carol S Giometti; Kenneth H Nealson; James K Fredrickson; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205

4.  TRedD--a database for tandem repeats over the edit distance.

Authors:  Dina Sokol; Firat Atagun
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

5.  Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae.

Authors:  Eugene Kolker; Kira S Makarova; Svetlana Shabalina; Alex F Picone; Samuel Purvine; Ted Holzman; Tim Cherny; David Armbruster; Robert S Munson; Grigory Kolesov; Dmitrij Frishman; Michael Y Galperin
Journal:  Nucleic Acids Res       Date:  2004-04-30       Impact factor: 16.971

6.  The EcoCyc Database.

Authors:  Peter D Karp; Daniel Weaver; Suzanne Paley; Carol Fulcher; Aya Kubo; Anamika Kothari; Markus Krummenacker; Pallavi Subhraveti; Deepika Weerasinghe; Socorro Gama-Castro; Araceli M Huerta; Luis Muñiz-Rascado; César Bonavides-Martinez; Verena Weiss; Martin Peralta-Gil; Alberto Santos-Zavaleta; Imke Schröder; Amanda Mackie; Robert Gunsalus; Julio Collado-Vides; Ingrid M Keseler; Ian Paulsen
Journal:  EcoSal Plus       Date:  2014-05

7.  Dynamic profiling of the glucose metabolic network in fasted rat hepatocytes using [1,2-13C2]glucose.

Authors:  Silvia Marin; W-N Paul Lee; Sara Bassilian; Shu Lim; Laszlo G Boros; Josep J Centelles; Josep Maria FernAndez-Novell; Joan J Guinovart; Marta Cascante
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

8.  Surface-enhanced Raman imaging of intracellular bioreduction of chromate in Shewanella oneidensis.

Authors:  Sandeep P Ravindranath; Kristene L Henne; Dorothea K Thompson; Joseph Irudayaraj
Journal:  PLoS One       Date:  2011-02-25       Impact factor: 3.240

9.  The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli.

Authors:  Dongping Wang; Bernarda Calla; Sornkanok Vimolmangkang; Xia Wu; Schuyler S Korban; Steven C Huber; Steven J Clough; Youfu Zhao
Journal:  PLoS One       Date:  2011-09-27       Impact factor: 3.240

10.  Systems biology: new approaches to old environmental health problems.

Authors:  William A Toscano; Kristen P Oehlke
Journal:  Int J Environ Res Public Health       Date:  2005-04       Impact factor: 3.390

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