Literature DB >> 12689590

Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals.

Masanori Uchikawa1, Yoshiko Ishida, Tatsuya Takemoto, Yusuke Kamachi, Hisato Kondoh.   

Abstract

Sox2 expression marks neural and sensory primordia at various stages of development. A 50 kb genomic region of chicken Sox2 was isolated and scanned for enhancer activity utilizing embryo electroporation, resulting in identification of a battery of enhancers. Although Sox2 expression in the early embryonic CNS appears uniform, it is actually pieced together by five separate enhancers with distinct spatio-temporal specificities, including the one activated by the neural induction signals emanating from Hensen's node. Enhancers for Sox2 expression in the lens and nasal/otic placodes and in the neural crest were also determined. These functionally identified Sox2 enhancers exactly correspond to the extragenic sequence blocks conspicuously conserved between chicken and mammals, which are not discernible by sequence comparison among mammals.

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Year:  2003        PMID: 12689590     DOI: 10.1016/s1534-5807(03)00088-1

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  136 in total

1.  The Sox-2 regulatory regions display their activities in two distinct types of multipotent stem cells.

Authors:  Satoru Miyagi; Tetsuichiro Saito; Ken-ichi Mizutani; Norihisa Masuyama; Yukiko Gotoh; Atsushi Iwama; Hiromitsu Nakauchi; Shinji Masui; Hitoshi Niwa; Masazumi Nishimoto; Masami Muramatsu; Akihiko Okuda
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

2.  Chromatin remodeling and histone modification in the conversion of oligodendrocyte precursors to neural stem cells.

Authors:  Toru Kondo; Martin Raff
Journal:  Genes Dev       Date:  2004-12-01       Impact factor: 11.361

3.  Highly conserved proximal promoter element harbouring paired Sox9-binding sites contributes to the tissue- and developmental stage-specific activity of the matrilin-1 gene.

Authors:  Otgonchimeg Rentsendorj; Andrea Nagy; Ildikó Sinkó; Andreea Daraba; Endre Barta; Ibolya Kiss
Journal:  Biochem J       Date:  2005-08-01       Impact factor: 3.857

4.  A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts.

Authors:  Elisa de la Calle-Mustienes; Cármen Gloria Feijóo; Miguel Manzanares; Juan J Tena; Elisa Rodríguez-Seguel; Annalisa Letizia; Miguel L Allende; José Luis Gómez-Skarmeta
Journal:  Genome Res       Date:  2005-07-15       Impact factor: 9.043

5.  An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

Authors:  R Andrew Cameron; Suk Hen Chow; Kevin Berney; Tsz-Yeung Chiu; Qiu-Autumn Yuan; Alexander Krämer; Argelia Helguero; Andrew Ransick; Mirong Yun; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-08       Impact factor: 11.205

6.  Sox2 is required for development of taste bud sensory cells.

Authors:  Tadashi Okubo; Larysa H Pevny; Brigid L M Hogan
Journal:  Genes Dev       Date:  2006-10-01       Impact factor: 11.361

Review 7.  Setting appropriate boundaries: fate, patterning and competence at the neural plate border.

Authors:  Andrew K Groves; Carole LaBonne
Journal:  Dev Biol       Date:  2013-12-07       Impact factor: 3.582

8.  SOX2 is a dose-dependent regulator of retinal neural progenitor competence.

Authors:  Olena V Taranova; Scott T Magness; B Matthew Fagan; Yongqin Wu; Natalie Surzenko; Scott R Hutton; Larysa H Pevny
Journal:  Genes Dev       Date:  2006-05-01       Impact factor: 11.361

9.  Metabolic Reprogramming Promotes Neural Crest Migration via Yap/Tead Signaling.

Authors:  Debadrita Bhattacharya; Ana Paula Azambuja; Marcos Simoes-Costa
Journal:  Dev Cell       Date:  2020-04-02       Impact factor: 12.270

10.  Different transcription factors regulate nestin gene expression during P19 cell neural differentiation and central nervous system development.

Authors:  Zhigang Jin; Li Liu; Wei Bian; Yongfeng Chen; Guoliang Xu; Leping Cheng; Naihe Jing
Journal:  J Biol Chem       Date:  2009-01-15       Impact factor: 5.157

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