Literature DB >> 12681919

NMR and modelling studies of disaccharide conformation.

Norman W H Cheetham1, Paramita Dasgupta, Graham E Ball.   

Abstract

Long-range heteronuclear coupling constants were measured across the glycosidic linkages for a series of eight alpha- or beta-linked disaccharides in aqueous solution. Multiple 13C site-selective excitation experiments using 1H decoupling in conjunction with pulsed field gradient-enhanced spectroscopy were used to determine 3J(C,H) values. These were subsequently compared with the respective couplings calculated, using a Karplus relationship, from molecular dynamics simulations with the explicit inclusion of water.

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Year:  2003        PMID: 12681919     DOI: 10.1016/s0008-6215(03)00069-7

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  9 in total

1.  Conformational and dynamical properties of disaccharides in water: a molecular dynamics study.

Authors:  Cristina S Pereira; David Kony; Riccardo Baron; Martin Müller; Wilfred F van Gunsteren; Philippe H Hünenberger
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

2.  Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose stereoisomers.

Authors:  Dongqi Wang; Maria Lovísa Ámundadóttir; Wilfred F van Gunsteren; Philippe H Hünenberger
Journal:  Eur Biophys J       Date:  2013-05-10       Impact factor: 1.733

3.  Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters.

Authors:  Stéphane Abel; François-Yves Dupradeau; E Prabhu Raman; Alexander D MacKerell; Massimo Marchi
Journal:  J Phys Chem B       Date:  2010-12-30       Impact factor: 2.991

4.  CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses.

Authors:  Olgun Guvench; Elizabeth R Hatcher; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2009-08-20       Impact factor: 6.006

5.  Deoxyfluoro-d-trehalose (FDTre) analogues as potential PET probes for imaging mycobacterial infection.

Authors:  Sarah R Rundell; Zachary L Wagar; Lisa M Meints; Claire D Olson; Mara K O'Neill; Brent F Piligian; Anne W Poston; Robin J Hood; Peter J Woodruff; Benjamin M Swarts
Journal:  Org Biomol Chem       Date:  2016-08-25       Impact factor: 3.876

Review 6.  Developments in the Karplus equation as they relate to the NMR coupling constants of carbohydrates.

Authors:  Bruce Coxon
Journal:  Adv Carbohydr Chem Biochem       Date:  2009       Impact factor: 12.200

7.  Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution.

Authors:  William B O'Dell; David C Baker; Sylvia E McLain
Journal:  PLoS One       Date:  2012-10-02       Impact factor: 3.240

8.  Microsecond kinetics in model single- and double-stranded amylose polymers.

Authors:  Benedict M Sattelle; Andrew Almond
Journal:  Phys Chem Chem Phys       Date:  2014-05-07       Impact factor: 3.676

9.  Using geometric criteria to study helix-like structures produced in molecular dynamics simulations of single amylose chains in water.

Authors:  Mohammad Hassan Khatami; William Barber; Hendrick W de Haan
Journal:  RSC Adv       Date:  2021-03-24       Impact factor: 3.361

  9 in total

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