Literature DB >> 12678553

Somatic mobility of the maize element Ac and its utility for gene tagging in aspen.

Sandeep Kumar1, Matthias Fladung.   

Abstract

We have investigated the somatic activity of the maize Activator (Ac) element in aspen with the objective of developing an efficient transposon-based system for gene isolation in a model tree species. The analysis of the new insertion sites revealed the exact reconstitution of the Ac, however, aberrant transposition events were also found. Characterization of the genomic sequences flanking the Ac insertions showed that about one third (22/75) of the sequences were significantly similar to sequences represented in public databases and might correspond to genes. The frequency of Ac landing into coding regions was about two-fold higher when compared to the frequency of T-DNA hitting the predicted genes (5/32) in the aspen genome. Thus, Ac is demonstrated to be a potentially useful heterologous transposon tag in a tree species. This is the first report on transposon-based gene tagging in a tree species describing the excision and reinsertion of transposable element into new genomic positions. We also suggest a heterologous transposon tagging strategy that can be used in aspen somatic cells to obtain dominant gain-of-function mutants and recessive loss-of-function mutants overcoming the regeneration time barrier of a long-lived tree species.

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Year:  2003        PMID: 12678553     DOI: 10.1023/a:1022505808929

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  33 in total

1.  Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.

Authors:  S Parinov; M Sevugan; D Ye; W C Yang; M Kumaran; V Sundaresan
Journal:  Plant Cell       Date:  1999-12       Impact factor: 11.277

2.  Early and multiple Ac transpositions in rice suitable for efficient insertional mutagenesis.

Authors:  R Greco; P B Ouwerkerk; A J Taal; C Favalli; T Beguiristain; P Puigdomènech; L Colombo; J H Hoge; A Pereira
Journal:  Plant Mol Biol       Date:  2001-05       Impact factor: 4.076

3.  Plant tagnology.

Authors: 
Journal:  Trends Plant Sci       Date:  1999-03       Impact factor: 18.313

4.  High-frequency T-DNA-mediated gene tagging in plants.

Authors:  C Koncz; N Martini; R Mayerhofer; Z Koncz-Kalman; H Körber; G P Redei; J Schell
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

Review 5.  Target site selection in transposition.

Authors:  N L Craig
Journal:  Annu Rev Biochem       Date:  1997       Impact factor: 23.643

6.  Excision of the maize transposable element Ac in periclinal chimeric leaves of 35S-Ac-rolC transgenic aspen-Populus.

Authors:  M Fladung; M R Ahuja
Journal:  Plant Mol Biol       Date:  1997-04       Impact factor: 4.076

7.  Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.

Authors:  Y G Liu; N Mitsukawa; T Oosumi; R F Whittier
Journal:  Plant J       Date:  1995-09       Impact factor: 6.417

8.  Transposition of the maize transposable element Ac in barley (Hordeum vulgare L.).

Authors:  S Scholz; H Lörz; S Lütticke
Journal:  Mol Gen Genet       Date:  2001-01

9.  Activation tagging in Arabidopsis.

Authors:  D Weigel; J H Ahn; M A Blázquez; J O Borevitz; S K Christensen; C Fankhauser; C Ferrándiz; I Kardailsky; E J Malancharuvil; M M Neff; J T Nguyen; S Sato; Z Y Wang; Y Xia; R A Dixon; M J Harrison; C J Lamb; M F Yanofsky; J Chory
Journal:  Plant Physiol       Date:  2000-04       Impact factor: 8.340

10.  Transposition in plants: a molecular model.

Authors:  H Saedler; P Nevers
Journal:  EMBO J       Date:  1985-03       Impact factor: 11.598

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  5 in total

1.  Potato virus X-induced gene silencing in leaves and tubers of potato.

Authors:  Odile Faivre-Rampant; Eleanor M Gilroy; Katarina Hrubikova; Ingo Hein; Steve Millam; Gary J Loake; Paul Birch; Mark Taylor; Christophe Lacomme
Journal:  Plant Physiol       Date:  2004-04       Impact factor: 8.340

2.  Suppression subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) altered in phenylpropanoid metabolism.

Authors:  Priya Ranjan; Yu-Ying Kao; Hongying Jiang; Chandrashekhar P Joshi; Scott A Harding; Chung-Jui Tsai
Journal:  Planta       Date:  2004-05-14       Impact factor: 4.116

Review 3.  Activation tagging in plants: a tool for gene discovery.

Authors:  Helen Tani; Xinwei Chen; Pedro Nurmberg; John J Grant; Marjorie SantaMaria; Andrea Chini; Eleanor Gilroy; Paul R J Birch; Gary J Loake
Journal:  Funct Integr Genomics       Date:  2004-05-20       Impact factor: 3.410

4.  Ac/Ds-transposon activation tagging in poplar: a powerful tool for gene discovery.

Authors:  Matthias Fladung; Olaf Polak
Journal:  BMC Genomics       Date:  2012-02-06       Impact factor: 3.969

5.  An Ac/Ds-mediated gene trap system for functional genomics in barley.

Authors:  Katina Lazarow; Stephanie Lütticke
Journal:  BMC Genomics       Date:  2009-01-29       Impact factor: 3.969

  5 in total

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