Literature DB >> 12676719

Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB.

Yuji Nagata1, Zbynek Prokop, Sona Marvanová, Jana Sýkorová, Marta Monincová, Masataka Tsuda, Jirí Damborský.   

Abstract

The homology model of protein Rv2579 from Mycobacterium tuberculosis H37Rv was compared with the crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26, and this analysis revealed that 6 of 19 amino acid residues which form an active site and entrance tunnel are different in LinB and Rv2579. To characterize the effect of replacement of these six amino acid residues, mutations were introduced cumulatively into the six amino acid residues of LinB. The sixfold mutant, which was supposed to have the active site of Rv2579, exhibited haloalkane dehalogenase activity with the haloalkanes tested, confirming that Rv2579 is a member of the haloalkane dehalogenase protein family.

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Year:  2003        PMID: 12676719      PMCID: PMC154798          DOI: 10.1128/AEM.69.4.2349-2355.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  27 in total

1.  Structure-specificity relationships for haloalkane dehalogenases.

Authors:  J Damborský; E Rorije; A Jesenská; Y Nagata; G Klopman; W J Peijnenburg
Journal:  Environ Toxicol Chem       Date:  2001-12       Impact factor: 3.742

2.  Redesigning the substrate specificity of an enzyme by cumulative effects of the mutations of non-active site residues.

Authors:  S Oue; A Okamoto; T Yano; H Kagamiyama
Journal:  J Biol Chem       Date:  1999-01-22       Impact factor: 5.157

3.  Dehalogenation of haloalkanes by Mycobacterium tuberculosis H37Rv and other mycobacteria.

Authors:  A Jesenská; I Sedlácek; J Damborský
Journal:  Appl Environ Microbiol       Date:  2000-01       Impact factor: 4.792

4.  Construction and characterization of histidine-tagged haloalkane dehalogenase (LinB) of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.

Authors:  Y Nagata; K Hynková; J Damborský; M Takagi
Journal:  Protein Expr Purif       Date:  1999-11       Impact factor: 1.650

5.  Comparative binding energy analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10.

Authors:  J Kmunícek; S Luengo; F Gago; A R Ortiz; R C Wade; J Damborský
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

6.  Haloalkane dehalogenases: structure of a Rhodococcus enzyme.

Authors:  J Newman; T S Peat; R Richard; L Kan; P E Swanson; J A Affholter; I H Holmes; J F Schindler; C J Unkefer; T C Terwilliger
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

Review 7.  Genetics and biochemistry of dehalogenating enzymes.

Authors:  D B Janssen; F Pries; J R van der Ploeg
Journal:  Annu Rev Microbiol       Date:  1994       Impact factor: 15.500

8.  Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26.

Authors:  J Marek; J Vévodová; I K Smatanová; Y Nagata; L A Svensson; J Newman; M Takagi; J Damborský
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

9.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

10.  An integrated map of the genome of the tubercle bacillus, Mycobacterium tuberculosis H37Rv, and comparison with Mycobacterium leprae.

Authors:  W J Philipp; S Poulet; K Eiglmeier; L Pascopella; V Balasubramanian; B Heym; S Bergh; B R Bloom; W R Jacobs; S T Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-02       Impact factor: 11.205

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  4 in total

1.  Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities.

Authors:  Yukari Sato; Marta Monincová; Radka Chaloupková; Zbynek Prokop; Yoshiyuki Ohtsubo; Kiwamu Minamisawa; Masataka Tsuda; Jirí Damborsky; Yuji Nagata
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

2.  Haloalkane dehalogenase LinB is responsible for beta- and delta-hexachlorocyclohexane transformation in Sphingobium indicum B90A.

Authors:  Poonam Sharma; Vishakha Raina; Rekha Kumari; Shweta Malhotra; Charu Dogra; Hansi Kumari; Hans-Peter E Kohler; Hans-Rudolf Buser; Christof Holliger; Rup Lal
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

3.  Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases.

Authors:  Andrea Jesenská; Martina Pavlová; Michal Strouhal; Radka Chaloupková; Iva Tesínská; Marta Monincová; Zbynek Prokop; Milan Bartos; Ivo Pavlík; Ivan Rychlík; Petra Möbius; Yuji Nagata; Jiri Damborsky
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

4.  HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.

Authors:  Lenka Sumbalova; Jan Stourac; Tomas Martinek; David Bednar; Jiri Damborsky
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

  4 in total

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