Literature DB >> 12670350

Scanning mutations of the 5'UTR regulatory sequence of L-ferritin by denaturing high-performance liquid chromatography: identification of new mutations.

Laura Cremonesi1, Rita Paroni, Barbara Foglieni, Silvia Galbiati, Isabella Fermo, Nadia Soriani, Silvana Belloli, Giuseppina Ruggeri, Giorgio Biasiotto, Mario Cazzola, Francesca Ferrari, Maurizio Ferrari, Paolo Arosio.   

Abstract

Hereditary hyperferritinaemia cataract syndrome is an autosomal dominant disorder caused by heterogeneous mutations of the iron regulatory element (IRE) in the ferritin l-chain mRNA. The mutations are rare and fast DNA scanning would facilitate diagnosis. The aim of the study was to compare the analytical performances of two fast DNA scanning techniques: denaturing high-performance liquid chromatography (DHPLC) and double-gradient denaturing gradient gel electrophoresis (DG-DGGE). We analysed the sequence encoding the 5' untranslated flanking region of ferritin l-chain mRNA, which includes an IRE stem loop structure. The two systems unambiguously identified all the 12 accessible mutations in a single run, including the difficult C-G transversions. DHPLC and DG-DGGE identified seven abnormal patterns in DNA samples from 47 subjects with unexplained hyperferritinaemia; all had mutations in the IRE sequence, including two not reported before: C36G and A37G. The scanning of 250 DNA samples from subjects genotyped for HFE led to the identification of four new mutations, all outside the IRE structure: C10T, C16T, C90T and del-T156. We conclude that DHPLC, similar to DG-DGGE, detects all the mutations in the l-ferritin 5'UTR sequence in a single run, and that various mutations occur outside the IRE structure.

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Year:  2003        PMID: 12670350     DOI: 10.1046/j.1365-2141.2003.04253.x

Source DB:  PubMed          Journal:  Br J Haematol        ISSN: 0007-1048            Impact factor:   6.998


  11 in total

1.  Structural effects of linkage disequilibrium on the transcriptome.

Authors:  Joshua S Martin; Matthew Halvorsen; Lauren Davis-Neulander; Justin Ritz; Chetna Gopinath; Arthur Beauregard; Alain Laederach
Journal:  RNA       Date:  2011-11-22       Impact factor: 4.942

2.  Identification and analysis of RNA structural disruptions induced by single nucleotide variants using Riprap and RiboSNitchDB.

Authors:  Jianan Lin; Yang Chen; Yuping Zhang; Zhengqing Ouyang
Journal:  NAR Genom Bioinform       Date:  2020-08-14

3.  Mutation analysis of the ferritin L-chain gene in age-related cataract.

Authors:  Nurit Assia; Nitza Goldenberg-Cohen; Gideon Rechavi; Ninette Amariglio; Yoram Cohen
Journal:  Mol Vis       Date:  2010-11-24       Impact factor: 2.367

4.  Disease-associated mutations that alter the RNA structural ensemble.

Authors:  Matthew Halvorsen; Joshua S Martin; Sam Broadaway; Alain Laederach
Journal:  PLoS Genet       Date:  2010-08-19       Impact factor: 5.917

5.  Multiple determinants within iron-responsive elements dictate iron regulatory protein binding and regulatory hierarchy.

Authors:  Jeremy B Goforth; Sheila A Anderson; Christopher P Nizzi; Richard S Eisenstein
Journal:  RNA       Date:  2009-11-25       Impact factor: 4.942

Review 6.  Hyperferritinaemia-cataract syndrome: worldwide mutations and phenotype of an increasingly diagnosed genetic disorder.

Authors:  Gunda Millonig; Martina U Muckenthaler; Sebastian Mueller
Journal:  Hum Genomics       Date:  2010-04       Impact factor: 4.639

7.  Evaluating our ability to predict the structural disruption of RNA by SNPs.

Authors:  Justin Ritz; Joshua S Martin; Alain Laederach
Journal:  BMC Genomics       Date:  2012-06-18       Impact factor: 3.969

8.  Novel mutations in the ferritin-L iron-responsive element that only mildly impair IRP binding cause hereditary hyperferritinaemia cataract syndrome.

Authors:  Sara Luscieti; Gabriele Tolle; Jessica Aranda; Carmen Benet Campos; Frank Risse; Érica Morán; Martina U Muckenthaler; Mayka Sánchez
Journal:  Orphanet J Rare Dis       Date:  2013-02-19       Impact factor: 4.123

9.  Sensitive measurement of single-nucleotide polymorphism-induced changes of RNA conformation: application to disease studies.

Authors:  Raheleh Salari; Chava Kimchi-Sarfaty; Michael M Gottesman; Teresa M Przytycka
Journal:  Nucleic Acids Res       Date:  2012-11-03       Impact factor: 16.971

10.  2. Post-Natal Molecular Diagnosis of Inherited Diseases.

Authors:  Maurizio Ferrari; Laura Cremonesi; Stefania Stenirri
Journal:  EJIFCC       Date:  2008-04-03
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