Literature DB >> 12668432

Finite element simulations of acetylcholine diffusion in neuromuscular junctions.

Kaihsu Tai1, Stephen D Bond, Hugh R MacMillan, Nathan Andrew Baker, Michael Jay Holst, J Andrew McCammon.   

Abstract

A robust infrastructure for solving time-dependent diffusion using the finite element package FEtk has been developed to simulate synaptic transmission in a neuromuscular junction with realistic postsynaptic folds. Simplified rectilinear synapse models serve as benchmarks in initial numerical studies of how variations in geometry and kinetics relate to endplate currents associated with fast-twitch, slow-twitch, and dystrophic muscles. The flexibility and scalability of FEtk affords increasingly realistic and complex models that can be formed in concert with expanding experimental understanding from electron microscopy. Ultimately, such models may provide useful insight on the functional implications of controlled changes in processes, suggesting therapies for neuromuscular diseases.

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Year:  2003        PMID: 12668432      PMCID: PMC1302790          DOI: 10.1016/S0006-3495(03)75029-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

1.  The architecture of active zone material at the frog's neuromuscular junction.

Authors:  M L Harlow; D Ress; A Stoschek; R M Marshall; U J McMahan
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

2.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

3.  Nicotinic acetylcholine receptor at 4.6 A resolution: transverse tunnels in the channel wall.

Authors:  A Miyazawa; Y Fujiyoshi; M Stowell; N Unwin
Journal:  J Mol Biol       Date:  1999-05-14       Impact factor: 5.469

4.  Crystal structure of an ACh-binding protein reveals the ligand-binding domain of nicotinic receptors.

Authors:  K Brejc; W J van Dijk; R V Klaassen; M Schuurmans; J van Der Oost; A B Smit; T K Sixma
Journal:  Nature       Date:  2001-05-17       Impact factor: 49.962

Review 5.  Molecular dynamics of acetylcholinesterase.

Authors:  Tongye Shen; Kaihsu Tai; Richard H Henchman; J Andrew McCammon
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

6.  Ultrastructural organization of lamprey reticulospinal synapses in three dimensions.

Authors:  Jenny S Gustafsson; András Birinyi; John Crum; Mark Ellisman; Lennart Brodin; Oleg Shupliakov
Journal:  J Comp Neurol       Date:  2002-08-19       Impact factor: 3.215

7.  Kinetic parameters for acetylcholine interaction in intact neuromuscular junction.

Authors:  B R Land; E E Salpeter; M M Salpeter
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

8.  Electrophysiologic differences between mouse extensor digitorum longus and soleus.

Authors:  J A Florendo; J F Reger; P K Law
Journal:  Exp Neurol       Date:  1983-11       Impact factor: 5.330

9.  Some factors affecting spontaneous transmitter release in dystrophic mice.

Authors:  P M Shalton; A C Wareham
Journal:  Muscle Nerve       Date:  1980 Mar-Apr       Impact factor: 3.217

10.  Alpha1-syntrophin-deficient skeletal muscle exhibits hypertrophy and aberrant formation of neuromuscular junctions during regeneration.

Authors:  Yukio Hosaka; Toshifumi Yokota; Yuko Miyagoe-Suzuki; Katsutoshi Yuasa; Michihiro Imamura; Ryoichi Matsuda; Takaaki Ikemoto; Shuhei Kameya; Shin'ichi Takeda
Journal:  J Cell Biol       Date:  2002-09-09       Impact factor: 10.539

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  13 in total

1.  Continuum diffusion reaction rate calculations of wild-type and mutant mouse acetylcholinesterase: adaptive finite element analysis.

Authors:  Yuhua Song; Yongjie Zhang; Chandrajit L Bajaj; Nathan A Baker
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Finite element solution of the steady-state Smoluchowski equation for rate constant calculations.

Authors:  Yuhua Song; Yongjie Zhang; Tongye Shen; Chandrajit L Bajaj; J Andrew McCammon; Nathan A Baker
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

3.  A new 3D mass diffusion-reaction model in the neuromuscular junction.

Authors:  Abdul Khaliq; Frank Jenkins; Mark DeCoster; Weizhong Dai
Journal:  J Comput Neurosci       Date:  2010-11-10       Impact factor: 1.621

4.  Hybrid finite element and Brownian dynamics method for diffusion-controlled reactions.

Authors:  Patricia Bauler; Gary A Huber; J Andrew McCammon
Journal:  J Chem Phys       Date:  2012-04-28       Impact factor: 3.488

5.  Hybrid finite element and Brownian dynamics method for charged particles.

Authors:  Gary A Huber; Yinglong Miao; Shenggao Zhou; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2016-04-28       Impact factor: 3.488

6.  Improvements to the APBS biomolecular solvation software suite.

Authors:  Elizabeth Jurrus; Dave Engel; Keith Star; Kyle Monson; Juan Brandi; Lisa E Felberg; David H Brookes; Leighton Wilson; Jiahui Chen; Karina Liles; Minju Chun; Peter Li; David W Gohara; Todd Dolinsky; Robert Konecny; David R Koes; Jens Erik Nielsen; Teresa Head-Gordon; Weihua Geng; Robert Krasny; Guo-Wei Wei; Michael J Holst; J Andrew McCammon; Nathan A Baker
Journal:  Protein Sci       Date:  2017-10-24       Impact factor: 6.725

7.  Finite element analysis of the time-dependent Smoluchowski equation for acetylcholinesterase reaction rate calculations.

Authors:  Yuhui Cheng; Jason K Suen; Deqiang Zhang; Stephen D Bond; Yongjie Zhang; Yuhua Song; Nathan A Baker; Chandrajit L Bajaj; Michael J Holst; J Andrew McCammon
Journal:  Biophys J       Date:  2007-02-16       Impact factor: 4.033

8.  Finite element analysis of drug electrostatic diffusion: inhibition rate studies in N1 neuraminidase.

Authors:  Yuhui Cheng; Michael J Holst; J A McCammon
Journal:  Pac Symp Biocomput       Date:  2009

9.  Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes I: Finite Element Solutions.

Authors:  Benzhuo Lu; Michael J Holst; J Andrew McCammon; Y C Zhou
Journal:  J Comput Phys       Date:  2010-09-20       Impact factor: 3.553

10.  Continuum simulations of acetylcholine diffusion with reaction-determined boundaries in neuromuscular junction models.

Authors:  Yuhui Cheng; Jason K Suen; Zoran Radić; Stephen D Bond; Michael J Holst; J Andrew McCammon
Journal:  Biophys Chem       Date:  2007-01-19       Impact factor: 2.352

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