Literature DB >> 12667089

Conformation of the hexasaccharide repeating subunit from the Vibrio cholerae O139 capsular polysaccharide.

Jacob Adeyeye1, Hugo F Azurmendi, Corne' J M Stroop, S Sozhamannan, A L Williams, A M Adetumbi, Judith A Johnson, C Allen Bush.   

Abstract

In the past decade, several outbreaks of cholera have been reported to be caused by Vibrio cholerae O139, a strain which differs from the more common O1 strain in that the former is encapsulated. The hexasaccharide repeating subunit has been isolated from the V. cholerae O139 capsular polysaccharide by digestion with a recently discovered polysaccharide lyase derived from a bacteriophage specific for this serogroup. It specifically cleaves at a single position of the 4-linked galacturonic acid producing an unsaturated sugar product in quantities for conformational studies by (1)H and (13)C NMR spectroscopy. We report conformational studies on this oligosaccharide by molecular modeling and NMR spectroscopy including nuclear Overhauser effects and residual dipolar coupling of a sample weakly oriented in liquid crystalline solution. The structure contains a tetrasaccharide epitope homologous to the human Lewis(b) blood group antigen, which adopts a relatively well-defined single conformation. Comparison of these results with those of a previously published study of the intact capsular polysaccharide indicates that the conformations of the epitope in the two cases are identical or at least closely similar. Thus, this epitope, which may be essential for the pathogenicity of this V. cholerae strain, is not a "conformational epitope" requiring a certain critical size for antigenicity as has been reported for several other bacterial capsular antigens.

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Year:  2003        PMID: 12667089     DOI: 10.1021/bi026700t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  9 in total

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2.  The biosynthesis of UDP-galacturonic acid in plants. Functional cloning and characterization of Arabidopsis UDP-D-glucuronic acid 4-epimerase.

Authors:  Xiaogang Gu; Maor Bar-Peled
Journal:  Plant Physiol       Date:  2004-11-24       Impact factor: 8.340

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Authors:  Paul Shealy; Mikhail Simin; Sang Ho Park; Stanley J Opella; Homayoun Valafar
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4.  Dynafold: a dynamic programming approach to protein backbone structure determination from minimal sets of Residual Dipolar Couplings.

Authors:  Rishi Mukhopadhyay; Stephanie Irausquin; Christopher Schmidt; Homayoun Valafar
Journal:  J Bioinform Comput Biol       Date:  2014-01-07       Impact factor: 1.122

5.  Concurrent Identification and Characterization of Protein Structure and Continuous Internal Dynamics with REDCRAFT.

Authors:  Hanin Omar; Aaron Hein; Casey A Cole; Homayoun Valafar
Journal:  Front Mol Biosci       Date:  2022-02-04

6.  Residual dipolar coupling investigation of a heparin tetrasaccharide confirms the limited effect of flexibility of the iduronic acid on the molecular shape of heparin.

Authors:  Lan Jin; Milos Hricovíni; Jon A Deakin; Malcolm Lyon; Dusan Uhrín
Journal:  Glycobiology       Date:  2009-07-31       Impact factor: 4.313

7.  Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.

Authors:  Derrick E Fouts; Jochen Klumpp; Kimberly A Bishop-Lilly; Mathumathi Rajavel; Kristin M Willner; Amy Butani; Matthew Henry; Biswajit Biswas; Manrong Li; M John Albert; Martin J Loessner; Richard Calendar; Shanmuga Sozhamannan
Journal:  Virol J       Date:  2013-05-28       Impact factor: 4.099

8.  Advances in the REDCAT software package.

Authors:  Chris Schmidt; Stephanie J Irausquin; Homayoun Valafar
Journal:  BMC Bioinformatics       Date:  2013-10-07       Impact factor: 3.169

9.  Protein structure validation and identification from unassigned residual dipolar coupling data using 2D-PDPA.

Authors:  Arjang Fahim; Rishi Mukhopadhyay; Ryan Yandle; James H Prestegard; Homayoun Valafar
Journal:  Molecules       Date:  2013-08-22       Impact factor: 4.411

  9 in total

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