Literature DB >> 12661000

Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site.

Alexey Teplyakov1, Galina Obmolova, Pavel P Khil, Andrew J Howard, R Daniel Camerini-Otero, Gary L Gilliland.   

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Year:  2003        PMID： 12661000     DOI： 10.1002/prot.10352

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  23 in total

1.  Intrinsic apurinic/apyrimidinic (AP) endonuclease activity enables Bacillus subtilis DNA polymerase X to recognize, incise, and further repair abasic sites.

Authors:  Benito Baños; Laurentino Villar; Margarita Salas; Miguel de Vega
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

2.  3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p.

Authors:  Mensur Dlakić
Journal:  RNA       Date:  2004-12-21       Impact factor: 4.942

3.  Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures.

Authors:  Kelly L Damm; Heather A Carlson
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

4.  Structure-based function inference using protein family-specific fingerprints.

Authors:  Deepak Bandyopadhyay; Jun Huan; Jinze Liu; Jan Prins; Jack Snoeyink; Wei Wang; Alexander Tropsha
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

5.  Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.

Authors:  Deepak Bandyopadhyay; Jun Huan; Jan Prins; Jack Snoeyink; Wei Wang; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2009-06-23       Impact factor: 3.686

6.  Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy.

Authors:  Wuxian Shi; Marco Punta; Jen Bohon; J Michael Sauder; Rhijuta D'Mello; Mike Sullivan; John Toomey; Don Abel; Marco Lippi; Andrea Passerini; Paolo Frasconi; Stephen K Burley; Burkhard Rost; Mark R Chance
Journal:  Genome Res       Date:  2011-04-11       Impact factor: 9.043

7.  YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family.

Authors:  David Redelberger; Farida Seduk; Olivier Genest; Vincent Méjean; Silke Leimkühler; Chantal Iobbi-Nivol
Journal:  J Bacteriol       Date:  2011-09-30       Impact factor: 3.490

8.  Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.

Authors:  Gye Won Han; Jaeju Ko; Carol L Farr; Marc C Deller; Qingping Xu; Hsiu-Ju Chiu; Mitchell D Miller; Jana Sefcikova; Srinivas Somarowthu; Penny J Beuning; Marc-André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson; Mary Jo Ondrechen
Journal:  Proteins       Date:  2011-05-02

Review 9.  Discrete-continuous duality of protein structure space.

Authors:  Ruslan I Sadreyev; Bong-Hyun Kim; Nick V Grishin
Journal:  Curr Opin Struct Biol       Date:  2009-05-29       Impact factor: 6.809

10.  Combining specificity determining and conserved residues improves functional site prediction.

Authors:  Olga V Kalinina; Mikhail S Gelfand; Robert B Russell
Journal:  BMC Bioinformatics       Date:  2009-06-09       Impact factor: 3.169
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