Literature DB >> 12657790

Structure determination of a small protein through a 23-dimensional molecular-replacement search.

Nicholas M Glykos1, Michael Kokkinidis.   

Abstract

The crystal structure of a 4-alpha-helical bundle protein has been determined by the application of a 23-dimensional molecular-replacement search performed using a stochastic method. The search model for the calculation was a 26-residue-long polyalanine helix amounting to less than 13% of the total number of atoms in the asymmetric unit of the target crystal structure. The crystal structure determination procedure is presented in detail, with emphasis on the molecular-replacement calculations.

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Year:  2003        PMID: 12657790     DOI: 10.1107/s0907444903002889

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

1.  Solving structures of protein complexes by molecular replacement with Phaser.

Authors:  Airlie J McCoy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13

Review 2.  Macromolecular ab initio phasing enforcing secondary and tertiary structure.

Authors:  Claudia Millán; Massimo Sammito; Isabel Usón
Journal:  IUCrJ       Date:  2015-01-01       Impact factor: 4.769

3.  On the application of the expected log-likelihood gain to decision making in molecular replacement.

Authors:  Robert D Oeffner; Pavel V Afonine; Claudia Millán; Massimo Sammito; Isabel Usón; Randy J Read; Airlie J McCoy
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-04       Impact factor: 7.652

4.  ARCIMBOLDO on coiled coils.

Authors:  Iracema Caballero; Massimo Sammito; Claudia Millán; Andrey Lebedev; Nicolas Soler; Isabel Usón
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-03-02       Impact factor: 7.652

5.  Phasertng: directed acyclic graphs for crystallographic phasing.

Authors:  Airlie J McCoy; Duncan H Stockwell; Massimo D Sammito; Robert D Oeffner; Kaushik S Hatti; Tristan I Croll; Randy J Read
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-01-01       Impact factor: 7.652

6.  NCS-constrained exhaustive search using oligomeric models.

Authors:  Michail N Isupov; Andrey A Lebedev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
  6 in total

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