Literature DB >> 12651734

TreeSAAP: selection on amino acid properties using phylogenetic trees.

Steve Woolley1, Justin Johnson, Matthew J Smith, Keith A Crandall, David A McClellan.   

Abstract

The software program TreeSAAP measures the selective influences on 31 structural and biochemical amino acid properties during cladogenesis, and performs goodness-of-fit and categorical statistical tests.

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Year:  2003        PMID： 12651734     DOI： 10.1093/bioinformatics/btg043

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  125 in total

1.  Characterizing molecular adaptation: a hierarchical approach to assess the selective influence of amino acid properties.

Authors:  Saheli Datta; Raquel Prado; Abel Rodríguez; Ananías A Escalante
Journal:  Bioinformatics       Date:  2010-09-16       Impact factor: 6.937

2.  Physicochemical evolution and positive selection of the gymnosperm matK proteins.

Authors:  Da Cheng Hao; Jun Mu; Shi Lin Chen; Pei Gen Xiao
Journal:  J Genet       Date:  2010-04       Impact factor: 1.166

3.  Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species.

Authors:  K Harrisson; A Pavlova; H M Gan; Y P Lee; C M Austin; P Sunnucks
Journal:  Heredity (Edinb)       Date:  2016-02-17       Impact factor: 3.821

4.  Isolation and characterization of the CYP2D6 gene in Felidae with comparison to other mammals.

Authors:  Tamara Schenekar; Kathrin A Winkler; Jennifer L Troyer; Steven Weiss
Journal:  J Mol Evol       Date:  2010-12-28       Impact factor: 2.395

5.  Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data.

Authors:  Marcos Pérez-Losada; Emily B Browne; Aaron Madsen; Thierry Wirth; Raphael P Viscidi; Keith A Crandall
Journal:  Infect Genet Evol       Date:  2005-03-24       Impact factor: 3.342

Review 6.  New methods for inferring population dynamics from microbial sequences.

Authors:  Marcos Pérez-Losada; Megan L Porter; Loubna Tazi; Keith A Crandall
Journal:  Infect Genet Evol       Date:  2006-04-19       Impact factor: 3.342

7.  The human retinoblastoma susceptibility gene (RB1): an evolutionary story in primates.

Authors:  Maria C Viana; William C Tavares; Ayslan C Brant; Mariana Boroni; Héctor N Seuánez
Journal:  Mamm Genome       Date:  2017-04-11       Impact factor: 2.957

8.  Detecting site-specific biochemical constraints through substitution mapping.

Authors:  Julien Dutheil
Journal:  J Mol Evol       Date:  2008-08-12       Impact factor: 2.395

9.  Population mitogenomics provides insights into evolutionary history, source of invasions and diversifying selection in the House Crow (Corvus splendens).

Authors:  Urszula Krzemińska; Hernán E Morales; Chris Greening; Árpád S Nyári; Robyn Wilson; Beng Kah Song; Christopher M Austin; Paul Sunnucks; Alexandra Pavlova; Sadequr Rahman
Journal:  Heredity (Edinb)       Date:  2017-11-28       Impact factor: 3.821

10.  Adaptive evolution of osmoregulatory-related genes provides insight into salinity adaptation in Chinese mitten crab, Eriocheir sinensis.

Authors:  Zhengfei Wang; Yuze Bai; Daizhen Zhang; Boping Tang
Journal:  Genetica       Date:  2018-05-04       Impact factor: 1.082
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