Literature DB >> 12651727

Engene: the processing and exploratory analysis of gene expression data.

Jorge García de la Nava1, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto Pascual-Montano.   

Abstract

Engene is a versatile, and platform-independent web tool for exploratory analysis of gene expression data that aims at storing, visualizing and processing large sets of gene expression patterns.

Mesh：

Year:  2003        PMID： 12651727     DOI： 10.1093/bioinformatics/btg028

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  18 in total

1.  Host response to the attenuated poxvirus vector NYVAC: upregulation of apoptotic genes and NF-kappaB-responsive genes in infected HeLa cells.

Authors:  Susana Guerra; Luis A López-Fernández; Alberto Pascual-Montano; José Luis Nájera; Angel Zaballos; Mariano Esteban
Journal:  J Virol       Date:  2006-01       Impact factor: 5.103

2.  Bifidobacterium breve UCC2003 Employs Multiple Transcriptional Regulators To Control Metabolism of Particular Human Milk Oligosaccharides.

Authors:  Kieran James; Mary O'Connell Motherway; Christophe Penno; Rebecca Louise O'Brien; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

3.  Metabolism of sialic acid by Bifidobacterium breve UCC2003.

Authors:  Muireann Egan; Mary O'Connell Motherway; Marco Ventura; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2014-05-09       Impact factor: 4.792

4.  Microarray analysis reveals characteristic changes of host cell gene expression in response to attenuated modified vaccinia virus Ankara infection of human HeLa cells.

Authors:  Susana Guerra; Luis A López-Fernández; Raquel Conde; Alberto Pascual-Montano; Keith Harshman; Mariano Esteban
Journal:  J Virol       Date:  2004-06       Impact factor: 5.103

5.  Cellular gene expression survey of vaccinia virus infection of human HeLa cells.

Authors:  Susana Guerra; Luis A López-Fernández; Alberto Pascual-Montano; Manuel Muñoz; Keith Harshman; Mariano Esteban
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

6.  Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.

Authors:  Kerry Joan O'Connell; Mary O'Connell Motherway; John O'Callaghan; Gerald F Fitzgerald; R Paul Ross; Marco Ventura; Catherine Stanton; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2013-08-02       Impact factor: 4.792

7.  Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)-type regulators.

Authors:  Kerry Joan O'Connell; Mary O'Connell Motherway; Andrea Liedtke; Gerald F Fitzgerald; R Paul Ross; Catherine Stanton; Aldert Zomer; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2014-06       Impact factor: 4.792

8.  bioNMF: a versatile tool for non-negative matrix factorization in biology.

Authors:  Alberto Pascual-Montano; Pedro Carmona-Saez; Monica Chagoyen; Francisco Tirado; Jose M Carazo; Roberto D Pascual-Marqui
Journal:  BMC Bioinformatics       Date:  2006-07-28       Impact factor: 3.169

9.  PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data.

Authors:  Victoria Martin-Requena; Antonio Muñoz-Merida; M Gonzalo Claros; Oswaldo Trelles
Journal:  BMC Bioinformatics       Date:  2009-01-12       Impact factor: 3.169

10.  Integrated analysis of gene expression by Association Rules Discovery.

Authors:  Pedro Carmona-Saez; Monica Chagoyen; Andres Rodriguez; Oswaldo Trelles; Jose M Carazo; Alberto Pascual-Montano
Journal:  BMC Bioinformatics       Date:  2006-02-07       Impact factor: 3.169
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