Literature DB >> 12651725

DigiNorthern, digital expression analysis of query genes based on ESTs.

Jianxin Wang1, Ping Liang.   

Abstract

DigiNorthern (DN) is a web-based tool for virtually displaying expression profiles of query genes based on EST sequences. Two utilities are available: DN1 takes one query gene and quantitatively display its expression levels in tissues/organs that express the gene with comparison between normal and neoplastic status of each tissue; DN2 takes two sequences as query genes and compares their expression profiles side by side.

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Year:  2003        PMID： 12651725     DOI： 10.1093/bioinformatics/btg044

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

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Journal:  Biochem J       Date:  2003-08-01       Impact factor: 3.857

2.  Quantitative gene expression profiles in real time from expressed sequence tag databases.

Authors:  Vincent A Funari; Konstantin Voevodski; Dimitry Leyfer; Laura Yerkes; Donald Cramer; Dean R Tolan
Journal:  Gene Expr       Date:  2010

3.  In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

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Journal:  BMC Genomics       Date:  2007-01-03       Impact factor: 3.969

4.  Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Authors:  Abdel Aouacheria; Vincent Navratil; Audrey Barthelaix; Dominique Mouchiroud; Christian Gautier
Journal:  BMC Genomics       Date:  2006-04-26       Impact factor: 3.969

5.  CancerEST: a web-based tool for automatic meta-analysis of public EST data.

Authors:  Julia Feichtinger; Ramsay J McFarlane; Lee D Larcombe
Journal:  Database (Oxford)       Date:  2014-04-07       Impact factor: 3.451

6.  Gateways to the FANTOM5 promoter level mammalian expression atlas.

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Journal:  Genome Biol       Date:  2015-01-05       Impact factor: 13.583

7.  Meta Analysis of Gene Expression Data within and Across Species.

Authors:  Ana C Fierro; Filip Vandenbussche; Kristof Engelen; Yves Van de Peer; Kathleen Marchal
Journal:  Curr Genomics       Date:  2008-12       Impact factor: 2.236

8.  GO-Diff: mining functional differentiation between EST-based transcriptomes.

Authors:  Zuozhou Chen; Weilin Wang; Xuefeng Bruce Ling; Jane Jijun Liu; Liangbiao Chen
Journal:  BMC Bioinformatics       Date:  2006-02-16       Impact factor: 3.169
  8 in total

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