Literature DB >> 12650920

Selection based on the folding properties of proteins with ribosome display.

Tomoaki Matsuura1, Andreas Plückthun.   

Abstract

Ribosome display is a powerful tool for selecting and evolving protein functions through ligand-binding. Here, this in vitro system was used to perform selection based on the folding properties of proteins, independent of specific ligand-binding. The selection is based on two properties of misfolded proteins: (1) increased sensitivity to proteolysis and (2) greater exposure of hydrophobic area. By targeting these properties, we show that compactly folded and soluble proteins can be enriched over insoluble and random coil proteins. This approach may be especially useful for selection and evolution of folded proteins from random sequence libraries.

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Year:  2003        PMID: 12650920     DOI: 10.1016/s0014-5793(03)00178-9

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  13 in total

1.  Strategies for selection from protein libraries composed of de novo designed secondary structure modules.

Authors:  Tomoaki Matsuura; Andreas Plückthun
Journal:  Orig Life Evol Biosph       Date:  2004-02       Impact factor: 1.950

2.  Solubilization of a membrane protein by combinatorial supercharging.

Authors:  Agnes Hajduczki; Sudipta Majumdar; Marie Fricke; Isola A M Brown; Gregory A Weiss
Journal:  ACS Chem Biol       Date:  2011-01-14       Impact factor: 5.100

3.  Compensatory evolution of a WW domain variant lacking the strictly conserved Trp residue.

Authors:  Hayato Yanagida; Tomoaki Matsuura; Tetsuya Yomo
Journal:  J Mol Evol       Date:  2007-12-18       Impact factor: 2.395

4.  Computational design and selections for an engineered, thermostable terpene synthase.

Authors:  Juan E Diaz; Chun-Shi Lin; Kazuyoshi Kunishiro; Birte K Feld; Sara K Avrantinis; Jonathan Bronson; John Greaves; Jeffery G Saven; Gregory A Weiss
Journal:  Protein Sci       Date:  2011-08-02       Impact factor: 6.725

5.  Highly diverse protein library based on the ubiquitous (β/α)₈ enzyme fold yields well-structured proteins through in vitro folding selection.

Authors:  Misha V Golynskiy; John C Haugner; Burckhard Seelig
Journal:  Chembiochem       Date:  2013-08-16       Impact factor: 3.164

6.  Engineered single-domain antibodies with high protease resistance and thermal stability.

Authors:  Greg Hussack; Tomoko Hirama; Wen Ding; Roger Mackenzie; Jamshid Tanha
Journal:  PLoS One       Date:  2011-11-30       Impact factor: 3.240

7.  Selection of diethylstilbestrol-specific single-chain antibodies from a non-immunized mouse ribosome display library.

Authors:  Yanan Sun; Baoan Ning; Ming Liu; Xianjun Gao; Xianjun Fan; Jianqing Liu; Zhixian Gao
Journal:  PLoS One       Date:  2012-03-13       Impact factor: 3.240

8.  Improved drug-like properties of therapeutic proteins by directed evolution.

Authors:  Andrew Buchanan; Franco Ferraro; Steven Rust; Sudharsan Sridharan; Ruth Franks; Greg Dean; Matthew McCourt; Lutz Jermutus; Ralph Minter
Journal:  Protein Eng Des Sel       Date:  2012-08-31       Impact factor: 1.650

9.  Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization.

Authors:  Matthew D Smith; Matthew A Rosenow; Meitian Wang; James P Allen; Jack W Szostak; John C Chaput
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240

10.  New molecular reporters for rapid protein folding assays.

Authors:  Stéphanie Cabantous; Yvonne Rogers; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  PLoS One       Date:  2008-06-11       Impact factor: 3.240

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