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Literature DB >> 12647390

The CATH domain structure database.

C A Orengo¹, F M G Pearl, J M Thornton.

Abstract

Mesh：

Substances：
Proteins

Year: 2003 PMID： 12647390 DOI： 10.1002/0471721204.ch13

Source DB: PubMed Journal: Methods Biochem Anal ISSN： 0076-6941

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Cited

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23 in total

1. E-MSD: an integrated data resource for bioinformatics.

Authors: A Golovin; T J Oldfield; J G Tate; S Velankar; G J Barton; H Boutselakis; D Dimitropoulos; J Fillon; A Hussain; J M C Ionides; M John; P A Keller; E Krissinel; P McNeil; A Naim; R Newman; A Pajon; J Pineda; A Rachedi; J Copeland; A Sitnov; S Sobhany; A Suarez-Uruena; G J Swaminathan; M Tagari; S Tromm; W Vranken; K Henrick
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

2. MODBASE, a database of annotated comparative protein structure models, and associated resources.

Authors: Ursula Pieper; Narayanan Eswar; Hannes Braberg; M S Madhusudhan; Fred P Davis; Ashley C Stuart; Nebojsa Mirkovic; Andrea Rossi; Marc A Marti-Renom; Andras Fiser; Ben Webb; Daniel Greenblatt; Conrad C Huang; Thomas E Ferrin; Andrej Sali
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

Review 3. Pretty good guessing: protein structure prediction at CASP5.

Authors: Rosemarie Swanson; Jerry Tsai
Journal: J Bacteriol Date: 2003-07 Impact factor: 3.490

4. SuperPose: a simple server for sophisticated structural superposition.

Authors: Rajarshi Maiti; Gary H Van Domselaar; Haiyan Zhang; David S Wishart
Journal: Nucleic Acids Res Date: 2004-07-01 Impact factor: 16.971

5. Probing protein mechanics: residue-level properties and their use in defining domains.

Authors: Isabelle Navizet; Fabien Cailliez; Richard Lavery
Journal: Biophys J Date: 2004-09 Impact factor: 4.033

6. Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5'-phosphate-dependent enzymes.

Authors: Alessandro Paiardini; Francesco Bossa; Stefano Pascarella
Journal: Protein Sci Date: 2004-11 Impact factor: 6.725

The CATH domain structure database.

1. E-MSD: an integrated data resource for bioinformatics.

2. MODBASE, a database of annotated comparative protein structure models, and associated resources.

Review 3. Pretty good guessing: protein structure prediction at CASP5.

4. SuperPose: a simple server for sophisticated structural superposition.

5. Probing protein mechanics: residue-level properties and their use in defining domains.

6. Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5'-phosphate-dependent enzymes.

7. Protein structure and evolutionary history determine sequence space topology.

8. Structural similarity to bridge sequence space: finding new families on the bridges.

9. Identifying and searching for conserved RNA localisation signals.

10. ProSMoS server: a pattern-based search using interaction matrix representation of protein structures.