Literature DB >> 12647386

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John D Westbrook1, P M D Fitzgerald.   

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Year:  2003        PMID： 12647386

Source DB:  PubMed          Journal:  Methods Biochem Anal        ISSN： 0076-6941


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  23 in total

1.  TRAJELIX: a computational tool for the geometric characterization of protein helices during molecular dynamics simulations.

Authors:  Mihaly Mezei; Marta Filizola
Journal:  J Comput Aided Mol Des       Date:  2006-05-10       Impact factor: 3.686

2.  Models of protein-ligand crystal structures: trust, but verify.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  J Comput Aided Mol Des       Date:  2015-02-10       Impact factor: 3.686

Review 3.  Homology modelling: a review about the method on hand of the diabetic antigen GAD 65 structure prediction.

Authors:  Marco Wiltgen; Gernot P Tilz
Journal:  Wien Med Wochenschr       Date:  2009

Review 4.  Protein structure databases.

Authors:  Roman A Laskowski
Journal:  Mol Biotechnol       Date:  2011-06       Impact factor: 2.695

5.  UCSF ChimeraX: Meeting modern challenges in visualization and analysis.

Authors:  Thomas D Goddard; Conrad C Huang; Elaine C Meng; Eric F Pettersen; Gregory S Couch; John H Morris; Thomas E Ferrin
Journal:  Protein Sci       Date:  2017-09-06       Impact factor: 6.725

6.  BioMagResBank (BMRB) as a Resource for Structural Biology.

Authors:  Pedro R Romero; Naohiro Kobayashi; Jonathan R Wedell; Kumaran Baskaran; Takeshi Iwata; Masashi Yokochi; Dimitri Maziuk; Hongyang Yao; Toshimichi Fujiwara; Genji Kurusu; Eldon L Ulrich; Jeffrey C Hoch; John L Markley
Journal:  Methods Mol Biol       Date:  2020

7.  BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks.

Authors:  Paul F Lang; Yassmine Chebaro; Xiaoyue Zheng; John A P Sekar; Bilal Shaikh; Darren A Natale; Jonathan R Karr
Journal:  Genome Biol       Date:  2020-05-18       Impact factor: 13.583

8.  Outcome of a workshop on applications of protein models in biomedical research.

Authors:  Torsten Schwede; Andrej Sali; Barry Honig; Michael Levitt; Helen M Berman; David Jones; Steven E Brenner; Stephen K Burley; Rhiju Das; Nikolay V Dokholyan; Roland L Dunbrack; Krzysztof Fidelis; Andras Fiser; Adam Godzik; Yuanpeng Janet Huang; Christine Humblet; Matthew P Jacobson; Andrzej Joachimiak; Stanley R Krystek; Tanja Kortemme; Andriy Kryshtafovych; Gaetano T Montelione; John Moult; Diana Murray; Roberto Sanchez; Tobin R Sosnick; Daron M Standley; Terry Stouch; Sandor Vajda; Max Vasquez; John D Westbrook; Ian A Wilson
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

Review 9.  A primer on metagenomics.

Authors:  John C Wooley; Adam Godzik; Iddo Friedberg
Journal:  PLoS Comput Biol       Date:  2010-02-26       Impact factor: 4.475

Review 10.  Trendspotting in the Protein Data Bank.

Authors:  Helen M Berman; Buvaneswari Coimbatore Narayanan; Luigi Di Costanzo; Shuchismita Dutta; Sutapa Ghosh; Brian P Hudson; Catherine L Lawson; Ezra Peisach; Andreas Prlić; Peter W Rose; Chenghua Shao; Huanwang Yang; Jasmine Young; Christine Zardecki
Journal:  FEBS Lett       Date:  2013-01-18       Impact factor: 4.124
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