Literature DB >> 12634808

Somatic stability of microsatellite loci in Eastern white pine, Pinus strobus L.

D Cloutier1, D Rioux, J Beaulieu, D J Schoen.   

Abstract

Variation at nuclear- and chloroplast-encoded microsatellite loci was studied among and within clonally propagated individuals of Eastern white pine. Total DNA was extracted and assayed from gamete-bearing tissue (megagametophytes) located on six different branch positions on each of 12 individual genets. No within-individual variation was observed among 12 loci studied. Estimates of numbers of mitotic cell divisions required to produce the tissue used as the source of genomic DNA were obtained by combining tree growth and anatomical data. This allowed for the calculation of upper bound estimates of numbers of mutations per locus per somatic cell division. The estimated somatic mutation rate was found to be substantially lower than those published for genomic microsatellite mutation rates in other plant species.

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Year:  2003        PMID: 12634808     DOI: 10.1038/sj.hdy.6800221

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  9 in total

1.  Microsatellite markers reveal high allelic variation in natural populations of Cryptomeria japonica near refugial areas of the last glacial period.

Authors:  Tomokazu Takahashi; Naoki Tani; Hideaki Taira; Yoshihiko Tsumura
Journal:  J Plant Res       Date:  2005-03-25       Impact factor: 2.629

2.  Microsatellite analysis of Rosa damascena Mill. accessions reveals genetic similarity between genotypes used for rose oil production and old Damask rose varieties.

Authors:  K Rusanov; N Kovacheva; B Vosman; L Zhang; S Rajapakse; A Atanassov; I Atanassov
Journal:  Theor Appl Genet       Date:  2005-06-10       Impact factor: 5.699

3.  Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data.

Authors:  K Bobiwash; S T Schultz; D J Schoen
Journal:  Heredity (Edinb)       Date:  2013-06-19       Impact factor: 3.821

4.  High somatic instability of a microsatellite locus in a clonal tree, Robinia pseudoacacia.

Authors:  Chunlan Lian; Ryuya Oishi; Naoya Miyashita; Taizo Hogetsu
Journal:  Theor Appl Genet       Date:  2003-11-19       Impact factor: 5.699

5.  Germline replications and somatic mutation accumulation are independent of vegetative life span in Arabidopsis.

Authors:  J Matthew Watson; Alexander Platzer; Anita Kazda; Svetlana Akimcheva; Sona Valuchova; Viktoria Nizhynska; Magnus Nordborg; Karel Riha
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

6.  Genomic variability within an organism exposes its cell lineage tree.

Authors:  Dan Frumkin; Adam Wasserstrom; Shai Kaplan; Uriel Feige; Ehud Shapiro
Journal:  PLoS Comput Biol       Date:  2005-10-28       Impact factor: 4.475

7.  Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants.

Authors:  Amanda R De La Torre; Zhen Li; Yves Van de Peer; Pär K Ingvarsson
Journal:  Mol Biol Evol       Date:  2017-06-01       Impact factor: 16.240

8.  Direct estimation of the mutation rate at dinucleotide microsatellite loci in Arabidopsis thaliana (Brassicaceae).

Authors:  T N Marriage; S Hudman; M E Mort; M E Orive; R G Shaw; J K Kelly
Journal:  Heredity (Edinb)       Date:  2009-06-10       Impact factor: 3.821

9.  Post-glacial phylogeography and evolution of a wide-ranging highly-exploited keystone forest tree, eastern white pine (Pinus strobus) in North America: single refugium, multiple routes.

Authors:  John W R Zinck; Om P Rajora
Journal:  BMC Evol Biol       Date:  2016-03-02       Impact factor: 3.260

  9 in total

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