Literature DB >> 12634349

Molecular clocks and the puzzle of RNA virus origins.

Edward C Holmes1.   

Abstract

Mesh：

Year:  2003        PMID： 12634349      PMCID： PMC150674          DOI： 10.1128/jvi.77.7.3893-3897.2003

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


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  45 in total

1.  Dating the origin of the African human T-cell lymphotropic virus type-i (HTLV-I) subtypes.

Authors:  S Van Dooren; M Salemi; A M Vandamme
Journal:  Mol Biol Evol       Date:  2001-04       Impact factor: 16.240

Review 2.  Virus evolution and genetic diversity of hantaviruses and their rodent hosts.

Authors:  A Plyusnin; S P Morzunov
Journal:  Curr Top Microbiol Immunol       Date:  2001       Impact factor: 4.291

Review 3.  Acute and persistent viral life strategies and their relationship to emerging diseases.

Authors:  L P Villarreal; V R Defilippis; K A Gottlieb
Journal:  Virology       Date:  2000-06-20       Impact factor: 3.616

4.  Maximum-likelihood phylogenetic analysis under a covarion-like model.

Authors:  N Galtier
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

5.  Mutation rate of GB virus C/hepatitis G virus over the entire genome and in subgenomic regions.

Authors:  H Nakao; H Okamoto; M Fukuda; F Tsuda; T Mitsui; K Masuko; H Iizuka; Y Miyakawa; M Mayumi
Journal:  Virology       Date:  1997-06-23       Impact factor: 3.616

6.  A reevaluation of the higher taxonomy of viruses based on RNA polymerases.

Authors:  P M Zanotto; M J Gibbs; E A Gould; E C Holmes
Journal:  J Virol       Date:  1996-09       Impact factor: 5.103

7.  Phylogeny of the genus Flavivirus.

Authors:  G Kuno; G J Chang; K R Tsuchiya; N Karabatsos; C B Cropp
Journal:  J Virol       Date:  1998-01       Impact factor: 5.103

8.  Phylogenetic analysis of the Arenaviridae: patterns of virus evolution and evidence for cospeciation between arenaviruses and their rodent hosts.

Authors:  M D Bowen; C J Peters; S T Nichol
Journal:  Mol Phylogenet Evol       Date:  1997-12       Impact factor: 4.286

9.  Determining divergence times of the major kingdoms of living organisms with a protein clock.

Authors:  R F Doolittle; D F Feng; S Tsang; G Cho; E Little
Journal:  Science       Date:  1996-01-26       Impact factor: 47.728

10.  Genetic analysis of the diversity and origin of hantaviruses in Peromyscus leucopus mice in North America.

Authors:  S P Morzunov; J E Rowe; T G Ksiazek; C J Peters; S C St Jeor; S T Nichol
Journal:  J Virol       Date:  1998-01       Impact factor: 5.103
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  71 in total

1.  Shared ancestry between a newfound mole-borne hantavirus and hantaviruses harbored by cricetid rodents.

Authors:  Hae Ji Kang; Shannon N Bennett; Andrew G Hope; Joseph A Cook; Richard Yanagihara
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

2.  New simian immunodeficiency virus infecting De Brazza's monkeys (Cercopithecus neglectus): evidence for a cercopithecus monkey virus clade.

Authors:  Frederic Bibollet-Ruche; Elizabeth Bailes; Feng Gao; Xavier Pourrut; Katrina L Barlow; Jonathan P Clewley; Jason M Mwenda; Daudi K Langat; Gerald K Chege; Harold M McClure; Eitel Mpoudi-Ngole; Eric Delaporte; Martine Peeters; George M Shaw; Paul M Sharp; Beatrice H Hahn
Journal:  J Virol       Date:  2004-07       Impact factor: 5.103

3.  Genome-wide networks of amino acid covariances are common among viruses.

Authors:  Maureen J Donlin; Brandon Szeto; David W Gohara; Rajeev Aurora; John E Tavis
Journal:  J Virol       Date:  2012-01-11       Impact factor: 5.103

4.  Long-term evolution of the Luteoviridae: time scale and mode of virus speciation.

Authors:  Israel Pagán; Edward C Holmes
Journal:  J Virol       Date:  2010-04-07       Impact factor: 5.103

5.  Ancient lentiviruses leave their mark.

Authors:  Edward C Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

6.  Calibration of multiple poliovirus molecular clocks covering an extended evolutionary range.

Authors:  Jaume Jorba; Ray Campagnoli; Lina De; Olen Kew
Journal:  J Virol       Date:  2008-02-20       Impact factor: 5.103

7.  Reconstruction of the cophylogenetic history of related phylogenetic trees with divergence timing information.

Authors:  Daniel Merkle; Martin Middendorf
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

8.  A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution.

Authors:  Robert J Gifford; Aris Katzourakis; Michael Tristem; Oliver G Pybus; Mark Winters; Robert W Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

9.  Origin and biology of simian immunodeficiency virus in wild-living western gorillas.

Authors:  Jun Takehisa; Matthias H Kraus; Ahidjo Ayouba; Elizabeth Bailes; Fran Van Heuverswyn; Julie M Decker; Yingying Li; Rebecca S Rudicell; Gerald H Learn; Cecile Neel; Eitel Mpoudi Ngole; George M Shaw; Martine Peeters; Paul M Sharp; Beatrice H Hahn
Journal:  J Virol       Date:  2008-12-10       Impact factor: 5.103

10.  Endogenous non-retroviral RNA virus elements in mammalian genomes.

Authors:  Masayuki Horie; Tomoyuki Honda; Yoshiyuki Suzuki; Yuki Kobayashi; Takuji Daito; Tatsuo Oshida; Kazuyoshi Ikuta; Patric Jern; Takashi Gojobori; John M Coffin; Keizo Tomonaga
Journal:  Nature       Date:  2010-01-07       Impact factor: 49.962
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