Literature DB >> 12634129

Toxicological evaluation of complex mixtures by pattern recognition: correlating chemical fingerprints to mutagenicity.

Ingvar Eide1, Gunhild Neverdal, Bodil Thorvaldsen, Bjørn Grung, Olav M Kvalheim.   

Abstract

We describe the use of pattern recognition and multivariate regression in the assessment of complex mixtures by correlating chemical fingerprints to the mutagenicity of the mixtures. Mixtures were 20 organic extracts of exhaust particles, each containing 102-170 individual compounds such as polycyclic aromatic hydrocarbons (PAHs), nitro-PAHs, oxy-PAHs, and saturated hydrocarbons. Mixtures were characterized by full-scan GC-MS (gas chromatography-mass spectrometry). Data were resolved into peaks and spectra for individual compounds by an automated curve resolution procedure. Resolved chromatograms were integrated, resulting in a predictor matrix that was used as input to a principal component analysis to evaluate similarities between mixtures (i.e., classification). Furthermore, partial least-squares projections to latent structures were used to correlate the GC-MS data to mutagenicity, as measured in the Ames Salmonella assay (i.e., calibration). The best model (high r2 and Q2) identifies the variables that co-vary with the observed mutagenicity. These variables may subsequently be identified in more detail. Furthermore, the regression model can be used to predict mutagenicity from GC-MS chromatograms of other organic extracts. We emphasize that both chemical fingerprints as well as detailed data on composition can be used in pattern recognition.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12634129      PMCID: PMC1241282          DOI: 10.1289/ehp.02110s6985

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  10 in total

Review 1.  The principles and practice of toxigenomics: applications and opportunities.

Authors:  W D Pennie; J D Tugwood; G J Oliver; I Kimber
Journal:  Toxicol Sci       Date:  2000-04       Impact factor: 4.849

2.  Mutagenicity testing of organic extracts of diesel exhaust particles after fractionation and recombination.

Authors:  L Ostby; S Engen; A Melbye; I Eide
Journal:  Arch Toxicol       Date:  1997       Impact factor: 5.153

3.  Resolution of GC-MS data of complex PAC mixtures and regression modeling of mutagenicity by PLS.

Authors:  I Eide; G Neverdal; B Thorvaldsen; H Shen; B Grung; O Kvalheim
Journal:  Environ Sci Technol       Date:  2001-06-01       Impact factor: 9.028

Review 4.  Bioassay-directed chemical analysis in environmental research.

Authors:  D Schuetzle; J Lewtas
Journal:  Anal Chem       Date:  1986-09       Impact factor: 6.986

5.  Toxicology of chemical mixtures: challenges for today and the future.

Authors:  V J Feron; J P Groten; D Jonker; F R Cassee; P J van Bladeren
Journal:  Toxicology       Date:  1995-12-28       Impact factor: 4.221

6.  Revised methods for the Salmonella mutagenicity test.

Authors:  D M Maron; B N Ames
Journal:  Mutat Res       Date:  1983-05       Impact factor: 2.433

Review 7.  A proposed approach to study the toxicology of complex mixtures of petroleum products: the integrated use of QSAR, lumping analysis and PBPK/PD modeling.

Authors:  H J Verhaar; J R Morroni; K F Reardon; S M Hays; D P Gaver; R L Carpenter; R S Yang
Journal:  Environ Health Perspect       Date:  1997-02       Impact factor: 9.031

8.  Mutagenicity testing of organic extracts of diesel exhaust particles after spiking with polycyclic aromatic hydrocarbons (PAH).

Authors:  E Bostrøm; S Engen; I Eide
Journal:  Arch Toxicol       Date:  1998-10       Impact factor: 5.153

9.  Mixture design and multivariate analysis in mixture research.

Authors:  I Eide; H G Johnsen
Journal:  Environ Health Perspect       Date:  1998-12       Impact factor: 9.031

Review 10.  Toxicology of chemical mixtures: international perspective.

Authors:  V J Feron; F R Cassee; J P Groten
Journal:  Environ Health Perspect       Date:  1998-12       Impact factor: 9.031

  10 in total
  9 in total

1.  Method to assess component contribution to toxicity of complex mixtures: Assessment of puberty acquisition in rats exposed to disinfection byproducts.

Authors:  Shahid Parvez; Glenn E Rice; Linda K Teuschler; Jane Ellen Simmons; Thomas F Speth; Susan D Richardson; Richard J Miltner; E Sidney Hunter; Jonathan G Pressman; Lillian F Strader; Gary R Klinefelter; Jerome M Goldman; Michael G Narotsky
Journal:  J Environ Sci (China)       Date:  2017-06-07       Impact factor: 5.565

2.  Exploiting lipid-free tubing passive samplers and embryonic zebrafish to link site specific contaminant mixtures to biological responses.

Authors:  Wendy E Hillwalker; Sarah E Allan; Robert L Tanguay; Kim A Anderson
Journal:  Chemosphere       Date:  2010-02-20       Impact factor: 7.086

3.  Bridging environmental mixtures and toxic effects.

Authors:  Sarah E Allan; Brian W Smith; Robert L Tanguay; Kim A Anderson
Journal:  Environ Toxicol Chem       Date:  2012-11-07       Impact factor: 3.742

4.  An empirical approach to sufficient similarity: combining exposure data and mixtures toxicology data.

Authors:  Scott Marshall; Chris Gennings; Linda K Teuschler; Leanna G Stork; Rogelio Tornero-Velez; Kevin M Crofton; Glenn E Rice
Journal:  Risk Anal       Date:  2013-02-11       Impact factor: 4.000

5.  Relationship between composition and toxicity of motor vehicle emission samples.

Authors:  Jacob D McDonald; Ingvar Eide; Jeanclare Seagrave; Barbara Zielinska; Kevin Whitney; Douglas R Lawson; Joe L Mauderly
Journal:  Environ Health Perspect       Date:  2004-11       Impact factor: 9.031

6.  Mutagenicity of an aged gasworks soil during bioslurry treatment.

Authors:  Christine L Lemieux; Krista D Lynes; Paul A White; Staffan Lundstedt; Lars Oberg; Iain B Lambert
Journal:  Environ Mol Mutagen       Date:  2009-06       Impact factor: 3.216

7.  Water pollutant fingerprinting tracks recent industrial transfer from coastal to inland China: a case study.

Authors:  Weiwei Zheng; Xia Wang; Dajun Tian; Songhui Jiang; Melvin E Andersen; Genhsjeng He; M James C Crabbe; Yuxin Zheng; Yang Zhong; Weidong Qu
Journal:  Sci Rep       Date:  2013-01-07       Impact factor: 4.379

8.  Genotoxicity of air borne particulates assessed by comet and the Salmonella mutagenicity test in Jeddah, Saudi Arabia.

Authors:  Sufian M Elassouli; Mohamed H Alqahtani; Waleed Milaat
Journal:  Int J Environ Res Public Health       Date:  2007-09       Impact factor: 3.390

9.  Towards a holistic and solution-oriented monitoring of chemical status of European water bodies: how to support the EU strategy for a non-toxic environment?

Authors:  Werner Brack; Beate I Escher; Erik Müller; Mechthild Schmitt-Jansen; Tobias Schulze; Jaroslav Slobodnik; Henner Hollert
Journal:  Environ Sci Eur       Date:  2018-09-04       Impact factor: 5.893

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.