Literature DB >> 12633843

A hydrophobic platform as a mechanistically relevant transition state stabilising factor appears to be present in the active centre of all glycoside hydrolases.

W Nerinckx1, T Desmet, M Claeyssens.   

Abstract

An in silico survey of the -1 subsite of all known 3D-structures of O-glycoside hydrolases containing a suitably positioned ligand has led to the recognition -- apparently without exceptions -- of a transition state stabilising hydrophobic platform which is complementary to a crucial hydrophobic patch of the ligand. This platform is family-specific and highly conserved. A comprehensive list is given with examples of enzymes belonging to 33 different families. Several typical constellations of platform - protein residues are described.

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Year:  2003        PMID: 12633843     DOI: 10.1016/s0014-5793(03)00148-0

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  8 in total

1.  Enzymatic properties and substrate specificity of the trehalose phosphorylase from Caldanaerobacter subterraneus.

Authors:  Jef Van der Borght; Chao Chen; Lieve Hoflack; Lucas Van Renterghem; Tom Desmet; Wim Soetaert
Journal:  Appl Environ Microbiol       Date:  2011-07-29       Impact factor: 4.792

2.  Molecular Recognition of Natural and Non-Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy.

Authors:  Valeria Gabrielli; Juan C Muñoz-García; Giulia Pergolizzi; Peterson de Andrade; Yaroslav Z Khimyak; Robert A Field; Jesús Angulo
Journal:  Chemistry       Date:  2021-10-08       Impact factor: 5.020

3.  GH47 and Other Glycoside Hydrolases Catalyze Glycosidic Bond Cleavage with the Assistance of Substrate Super-arming at the Transition State.

Authors:  Jonathan C K Quirke; David Crich
Journal:  ACS Catal       Date:  2021-08-04       Impact factor: 13.700

4.  Processivity, substrate binding, and mechanism of cellulose hydrolysis by Thermobifida fusca Cel9A.

Authors:  Yongchao Li; Diana C Irwin; David B Wilson
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

5.  Modulation of activity by Arg407: structure of a fungal alpha-1,2-mannosidase in complex with a substrate analogue.

Authors:  Yuri D Lobsanov; Takashi Yoshida; Tom Desmet; Wim Nerinckx; Patrick Yip; Marc Claeyssens; Annette Herscovics; P Lynne Howell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-02-20

6.  Structural and mechanistic insight into N-glycan processing by endo-α-mannosidase.

Authors:  Andrew J Thompson; Rohan J Williams; Zalihe Hakki; Dominic S Alonzi; Tom Wennekes; Tracey M Gloster; Kriangsak Songsrirote; Jane E Thomas-Oates; Tanja M Wrodnigg; Josef Spreitz; Arnold E Stütz; Terry D Butters; Spencer J Williams; Gideon J Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-04       Impact factor: 11.205

7.  Glycosyl Oxocarbenium Ions: Structure, Conformation, Reactivity, and Interactions.

Authors:  Antonio Franconetti; Ana Ardá; Juan Luis Asensio; Yves Blériot; Sébastien Thibaudeau; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2021-04-30       Impact factor: 22.384

8.  Structure of the GH76 α-mannanase homolog, BT2949, from the gut symbiont Bacteroides thetaiotaomicron.

Authors:  Andrew J Thompson; Fiona Cuskin; Richard J Spears; Jerome Dabin; Johan P Turkenburg; Harry J Gilbert; Gideon J Davies
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-01-23
  8 in total

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