Literature DB >> 12620873

Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils.

Martina S Girvan1, Juliet Bullimore, Jules N Pretty, A Mark Osborn, Andrew S Ball.   

Abstract

Degradation of agricultural land and the resulting loss of soil biodiversity and productivity are of great concern. Land-use management practices can be used to ameliorate such degradation. The soil bacterial communities at three separate arable farms in eastern England, with different farm management practices, were investigated by using a polyphasic approach combining traditional soil analyses, physiological analysis, and nucleic acid profiling. Organic farming did not necessarily result in elevated organic matter levels; instead, a strong association with increased nitrate availability was apparent. Ordination of the physiological (BIOLOG) data separated the soil bacterial communities into two clusters, determined by soil type. Denaturing gradient gel electrophoresis and terminal restriction fragment length polymorphism analyses of 16S ribosomal DNA identified three bacterial communities largely on the basis of soil type but with discrimination for pea cropping. Five fields from geographically distinct soils, with different cropping regimens, produced highly similar profiles. The active communities (16S rRNA) were further discriminated by farm location and, to some degree, by land-use practices. The results of this investigation indicated that soil type was the key factor determining bacterial community composition in these arable soils. Leguminous crops on particular soil types had a positive effect upon organic matter levels and resulted in small changes in the active bacterial population. The active population was therefore more indicative of short-term management changes.

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Year:  2003        PMID: 12620873      PMCID: PMC150080          DOI: 10.1128/AEM.69.3.1800-1809.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  33 in total

1.  Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns.

Authors:  A E McCaig; L A Glover; J I Prosser
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

2.  The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation.

Authors:  D.H. Buckley; T.M. Schmidt
Journal:  Microb Ecol       Date:  2001-07       Impact factor: 4.552

3.  Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes.

Authors:  A Felske; A Wolterink; R Van Lis; W M De Vos; A D Akkermans
Journal:  Appl Environ Microbiol       Date:  2000-09       Impact factor: 4.792

4.  Soil quality and financial performance of biodynamic and conventional farms in new zealand.

Authors:  J P Reganold; A S Palmer; J C Lockhart; A N Macgregor
Journal:  Science       Date:  1993-04-16       Impact factor: 47.728

5.  Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis.

Authors:  M J Ferris; D M Ward
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

6.  Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity

Authors: 
Journal:  Appl Environ Microbiol       Date:  1998-11       Impact factor: 4.792

7.  Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands).

Authors:  A Felske; A Wolterink; R Van Lis; A D Akkermans
Journal:  Appl Environ Microbiol       Date:  1998-03       Impact factor: 4.792

8.  Molecular microbial diversity of an agricultural soil in Wisconsin.

Authors:  J Borneman; P W Skroch; K M O'Sullivan; J A Palus; N G Rumjanek; J L Jansen; J Nienhuis; E W Triplett
Journal:  Appl Environ Microbiol       Date:  1996-06       Impact factor: 4.792

9.  Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species.

Authors:  V Farrelly; F A Rainey; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

10.  Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepis) and Sitka spruce (Picea sitchensis).

Authors:  Susan J. Grayston; Colin D. Campbell
Journal:  Tree Physiol       Date:  1996 Nov-Dec       Impact factor: 4.196

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  106 in total

1.  Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens.

Authors:  Martina S Girvan; Juliet Bullimore; Andrew S Ball; Jules N Pretty; A Mark Osborn
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

2.  Microbial diversity and heterogeneity in sandy subsurface soils.

Authors:  Jizhong Zhou; Beicheng Xia; Heshu Huang; Anthony V Palumbo; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

3.  Distinctive bacterial communities in the rhizoplane of four tropical tree species.

Authors:  Yoon Myung Oh; Mincheol Kim; Larisa Lee-Cruz; Ang Lai-Hoe; Rusea Go; N Ainuddin; Raha Abdul Rahim; Noraini Shukor; Jonathan M Adams
Journal:  Microb Ecol       Date:  2012-07-06       Impact factor: 4.552

4.  Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management.

Authors:  Karin Enwall; Ingela N Throbäck; Maria Stenberg; Mats Söderström; Sara Hallin
Journal:  Appl Environ Microbiol       Date:  2010-01-29       Impact factor: 4.792

5.  Identification and specific detection of a novel pseudomonadaceae cluster associated with soils from winter wheat plots of a long-term agricultural field experiment.

Authors:  Manuel Pesaro; Franco Widmer
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

6.  Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments.

Authors:  Kelly Haynes; Tanja A Hofmann; Cindy J Smith; Andrew S Ball; Graham J C Underwood; A Mark Osborn
Journal:  Appl Environ Microbiol       Date:  2007-08-03       Impact factor: 4.792

7.  Comparison of 16S rRNA and 16S rDNA T-RFLP approaches to study bacterial communities in soil microcosms treated with chromate as perturbing agent.

Authors:  Alessio Mengoni; Enrico Tatti; Francesca Decorosi; Carlo Viti; Marco Bazzicalupo; Luciana Giovannetti
Journal:  Microb Ecol       Date:  2005-11-03       Impact factor: 4.552

8.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques.

Authors:  Naoise Nunan; Timothy J Daniell; Brajesh K Singh; Artemis Papert; James W McNicol; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

9.  Distribution of microbial communities associated with the dominant high marsh plants and sediments of the United States East Coast.

Authors:  L K Blum; M S Roberts; J L Garland; A L Mills
Journal:  Microb Ecol       Date:  2004-06-29       Impact factor: 4.552

10.  Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization.

Authors:  Karin Enwall; Laurent Philippot; Sara Hallin
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

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